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Mutant Lines
54-5027-1

54-5027-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 75510 [Map]; Strand: c
- AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
  Distance: -121; Region: promoter
- AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
  Distance: -132; Region: promoter
- AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
  Distance: -10; Region: promoter
- AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
  Distance: -10; Region: promoter

GATCTCTGAG GCTAACTAAC AGGAAGGAAG CGGGAGAAGA GCAGCTGCAG 
AGTCGCTCTT GTTCTAGCTG CTGCTGACTT TGGTGGACCA ACCAACTTAA 
TATAATGGTT TGGGCCTTAG AATGGTTTGG GCCTATACCG AGAGGCCCGG 
CTTACCCAGA AAGAAATGCA GCAATAGTCA ATGCCACTGC CTGGAATTCG 
TCGATCGAGC GATAAGAAGA AGACTGGAAT TTTTTTGAGG AGGACTCTGC 
TCCATCGCCG CCCGCCCTGT AACCCACCGG ACTCAGTAAA CTAGTCTGTA 
ACACAATATC TTCTATTTCA GATAAGATTT AGCTTGGAGA AGAGCAAGTT 
CCGAAAATGG AGGGGCGTCG TGTATAGATC CACCACCCAC AGGTTCGTAG 
ATTCCATANC CTTGGATTGT GTTTTCTTTT TGCTTTCTNN GNGACNAATT 
CCTNCGATTT TAGNGAACAT GNCTCTGATT TTGGTGTCCT GANNNGGATN 
TANNCGGGGN CNNGTNTTAA ACTNNACTNG NACTGNNNNA AAAAAAAATT 
NNGGGGNGCN NTTTNNNCNN NNNTNNNGGN NNTNNT

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 75626 [Map]; Strand: c
  - AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
    Distance: -237; Region: promoter
  - AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
    Distance: -248; Region: promoter
  - AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
    Distance: 0; Region: exon1 (CDS)
  - AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-5027-1 - 3-prime edge
```
CAGAGATCCT CGTTCCCCGA TAATGGATTT GGGAAAACTG ATCCAGCTGT 
CTGCGCTGCT GTGCCCATTT CTTCTATCAT TACACTTTAG AATCGCTGGG 
GCCTCCGCCC ACATCTACTC TTCCCAGCCC TTCCACGATG TCGGTAATTC 
TCTCCTCCTC TACGGTGGCA GCGAGGGCAT CTTCGCCTCT TCCCGATCTT 
TAATCAGGTA TATTCTATGG NATNTAACAA TTTTTCAACT CTTTTGATGC 
TCTCTACTCT ACTCTACTCA TCCTCCCTCC TCACTGCAGG TTTGAGAACA 
TCACTCTCTG GAGGACAATT ACCGGTAAGG GCCACCGCAN CAATGGGTTA 
GTTCAAGCAG TGATCTTTTG AAGCCTCCGA TCGTAACAAT ATCGGTGGTC 
AGCTTACNGA NGCCAAAGAT CACCAGCCCC GGGCCCGTCN ACCACCCCNG 
GCCCCTAAAA A
```

AT2G01060.1

Model type: Protein coding
Short Description: myb-like HTH transcriptional regulator family protein
Computational Description: myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01060.2

Model type: Protein coding
Short Description: myb-like HTH transcriptional regulator family protein
Computational Description: myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01070.1

Model type: Protein coding
Short Description: Lung seven transmembrane receptor family protein
Computational Description: Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01070.2

Model type: Protein coding
Short Description: Lung seven transmembrane receptor family protein
Computational Description: Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR