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54-5038-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33856 [Map]; Strand: w
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -235; Region: promoter
    Flanking Genome Sequence: 54-5038-1 - 5-prime edge 
    CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGTCCAT CTCCAAACAA 
    GGTCCTTGTG GTCGTGGGTT CGAGCCCCAC GGTGGGCGAT AGTGTTTTTT 
    CTGTTGTTTT TGTAAAGAGC TGAAGTTATA AATGGGCTTT GAAATTAATG 
    GGTTCGAACA CCAACGGTGG GCCTTTTTTT CTTTCTATTT TTGTAAAGAG 
    CNTGAATTTT AAAATGGGCT TTGAAATTAA TGGATCAGTG AGGTTAAGGC 
    CCATATTTCT AATAAAATTA GAAGTAGTTA CAAACCCGAC CCGACCCGGT 
    TACGTGTATG CGGAGATCAC TCTCCTCTCC ATAAGCTAAG CTCTAGAAAC 
    ACCGCCTTTA ACGTCTCGCT GCACCATTTT TCATCGTTGA TCAGTCGTCG 
    ATCCTCTTGA GTGATTTGAT TTTAGACTTT CTAGTTATCA AACTCGAAAG 
    ATGGATTCTG TCCTTGTAGT GGGCATTGCA TCGGTTATTC TCGGTGCGTT 
    GATCGCTGTA CTCTTCTTCG GTAGCTACTT CCGGAAGCGG ACATCGGAGG 
    TGCAATCCAT GGCCAAAGCG GAGCCTCAGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 65436 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 54-5038-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT 
    AATGGTGAGA ACCACATGAG AGGCTCTCAC CATTTTTAAG TTTTAATGTT 
    GCTTTTATCA AACTTAAGAA CTTGAATTAA GTTTTGTCTC CTCCAATGGT 
    GGGATTCTCT TGAGAAAAAA ATAAATTTTG TAAAACAATA CATATATGGT 
    TTTGTTTACA ATACATGTTT GCTTTTACTT GGTACAAAAC ATTGAAAATG 
    TACAATCAAT CAAGAGAGGA CTAGAGACAT TGAAAACGTA CAATCAATTT 
    GTTAATATTA AACAAACAAA ATGGGGAAGT TTTCAGGGAA AAGTTTCTCA 
    CTTGAGCTAT GTACTCAGCA AGACCATGAG TCTGCAACAA CAAAACAGAT 
    CACAATTATT CTCCTGAGAG TATGTTAATC CGACCACAAG AAAAGTCATG 
    AAGCAAAATC TTTACTTACC AAAACACATA GAAGCCTAAT ATAGATAGAT 
    ATCATATCAC TCACCCTAAC ATAAAGAAAA CATATAAAAC TTGTCTATTT 
    AGCTGATTAA ACAATCAATC GGCTTCTCTT ACACAACATG TTGTTAATCT 
    TTGCTTTAAA CTTAACTATG TCTTCTATTC TAACCCCNCT CTTACNTCTT 
    TTCTAATGAT CGNCNTTAGC CCNAAGATTT ATGAAACATT CATATTCTAC 
    TTATAACAAA GGAGGAGTTA TATNTCTACN TGTCTNTAAA AACATACTTT 
    CTTTGGNACA TNNTTTNTTT TAAGANAA

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR