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54-5053-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1570432 [Map]; Strand: c
      • AT4G03540.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-5053-1 - 5-prime edge 
    CNTTGAAAAA CTAACAAAAT CCCGGTTATA CGATAACGGT CGGTACGGGA 
    TTTTCCCATC CTACTTTCAT TTGATGCAGA GAATAAAAAT TGGTACCAAA 
    TCCAAGACGA CGACGAATTT CCAAAGCAAA CTCTCCTTTG GAAGAAACAG 
    AACTAGAAAA CTGTAAACAC TCACAACAGC AGTTTGCGAT TACAAAATAC 
    CTGCCAAACA TGTTTTATTT TGTTACCACA TATAATATAT TCACATATGA 
    TATAGCCAGG TCATAAGATG TATAATTTAC NTGCAGTGAC TCAGCAACAA 
    AATAAGAAGA ANTCGTGTAC ATACTTAAAC GCTGCCATNT NGGTGTACTT 
    AGCTTCNCGG GAGANGGCTN ACGAAGGAAG CTGGGTAGNG GCTAGAGAGG 
    ANAACCTATC ANGGNGGCGA GGAGCCGNAC CAAACGCTGG CGATAGNNCC 
    ACAANNANNN NCTATTTTTT TTGANAANNG CNCCATCNTN TCGGTGTNGG 
    GGATTTNCCN TTCAACGGGG GATTTCTNTN TGNTTTTTNA ACAAAATGTN 
    CGAGCACACN CACANNAATG TGTAAAAACC CANNNNANCN NNGGGGANGA 
    NGGGGGNGAA CCGTACNCCN NCCCGGNACC CCGGNAANAC CCACCTATTG 
    GGNTANCCNC CAANNATATT NTNNNNNTAT ATAAAGNGAG GGGGGATGNG 
    CTGTTNGCNG ATATTTTTAC ANCTATCTTC ACCGTNANCG TCTNATTTTC 
    ACACACGANT ATNTTTCTNT TTATGACGNG GGGAACCACA AAANAAAAAG 
    TGCTTTATCA NAAANACAAA GAGTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2334689 [Map]; Strand: c
      • AT4G04630.1 - [+] show detail - Protein of unknown function, DUF584
        Distance: -1889; Region: intergenic
      • AT4G04632.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 4897; Region: intergenic
    Flanking Genome Sequence: 54-5053-1 - 3-prime edge 
    CTTGTCCTAA CACCTAAGAA CAAAATAGTG AAATAGATAC ATTAAACTTG 
    CACAAAAATG TCAAGACAAT GTCTCTATCC TTTTTTTTTG TCAAGAAAGA 
    CAAAGTCATA TAAGAAAATT AAATAAGAGC ACATACNGAA AAAAACATAT 
    TAGCAAACAA CAATTTTTTT TTAAATAACG ACAAATTAGA GTGTTAGAAT 
    GATCAAAAAA TGGTAATAAA TGTATGAGCT AGTTGTTAAT GTTCCTTTAA 
    ATTGACAAAG CTTGTTTGGC ACTTTCAAGC CCAGCAACAA CTGTCCACTT 
    AACGTTAGGC TTTTCCCTTA TAATAGCAGA GTTTAACCCA GCTCGAAGCT

AT4G03540.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G03700.1); Has 607 Blast hits to 607 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04630.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF584
Computational Description
Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT4G21970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04632.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G45670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR