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54-5096-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17304761 [Map]; Strand: c
      • AT2G41500.1 - [+] show detail - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-5096-1 - 5-prime edge 
    CTGTTTTATA TGTTTCTTCA GGTTTTCTCC GTGAATTTCT CTCCTAATGG 
    TTATCACTTG GCATCTGGTG GGGAGGATAA TCAATGCCGT ATTTGGGATC 
    TAAGAATGAG AAAGTCATTG TACATTATAC CAGCTCATGC TAACCTTGTG 
    TCTCAAGTGA AGTATGAGCC ACAAGAAGGC TACTTTCTGG CCACTGCCTC 
    ATACGACATG AAAGTCAATG TAACTACTTC TATAATCCCT TGCCTTAGTA 
    TTTTTTTTTT TTNAAGCNTT NNGTTCANTG GNCTNANAGT TGNATCCNAN 
    TTNTTNNNTT TTNGNNNCCC AAANTNGGCN NGNAAAAAAT TTNNCCCNCN 
    TAAAAANCTA AATNTTTTTT TTTTTTTCCC NTGGTTTGGG GGNCNTNGGG 
    GNCCNTTTTT TTTTTNANNC TTTTNNGGGN TGGNNTTNNN GGGGGGTTTT 
    TNGGGCCNAA AAAAANTAAA NCNNANNGGT TGGGNAAAAA ANCTTTATNN 
    NNTTTTANGG GGGGGTNAAN CCCCCNNCCN CTNNTTTNAG GNATTTTNCC 
    CNNGGNNGGG GGNNTAAGGG GGGGGNTTTN NNNNAAAANN GGGNANNCNC 
    NNNTTTCCCN AANNNNNNNN GNGNNCANCC NTNAAACNTT TTTNAAAGGG 
    GNTNNNNNNN NAAAAAACCN ANNNNGGNNT TNCCNNTAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30041793 [Map]; Strand: c
      • AT1G79850.1 - [+] show detail - ribosomal protein S17
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5096-1 - 3-prime edge 
    TTTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTAAAGCG GGCATTCTGT GGTTCGGGAA GGAACTGGGC TTAGAGAGAG 
    ACGAGAGAGG AGTGGAGCCA TGGGCGAACG GAGACGAAAG CTACCAGCCC 
    GGCCNTNNAC CACNCCTNCC CTTTNAGNNA NANNNNNNNN TCCNGNNNCG 
    NNNNCNNNNC GGGNTNTNTN NNGTTTNTT

AT1G79850.1

Model type
Protein coding
Short Description
ribosomal protein S17
Curator Summary
nuclear-encoded 30S chloroplast ribosomal protein S17
Computational Description
ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41500.1

Model type
Protein coding
Short Description
WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
Curator Summary
Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.
Computational Description
LACHESIS (LIS); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), WD40 repeat (InterPro:IPR001680), Splicing factor motif (InterPro:IPR003648), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G05720.1); Has 96331 Blast hits to 36444 proteins in 930 species: Archae - 78; Bacteria - 11869; Metazoa - 38307; Fungi - 21059; Plants - 12275; Viruses - 15; Other Eukaryotes - 12728 (source: NCBI BLink).
Link
InterPro Scan - TAIR