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54-5103-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3907531 [Map]; Strand: w
      • AT2G10230.1 - [+] show detail - transposable element gene
        Distance: 857; Region: intergenic
      • AT2G10232.1 - [+] show detail - transposable element gene
        Distance: -1058; Region: intergenic
    Flanking Genome Sequence: 54-5103-1 - 5-prime edge 
    GTTTNGTANT TNTACTGGTC CNTCTGAGGC TGCCTTGATC CAGTANNAAG 
    GTCGCNTNAA CTGCAGCCTT CTCTGCTGCA TACTAGATCN NGTAGNGAGG 
    TNNANTACAA TGATACCTCA TTCTGTCGCT GCCTNNATCG AGTGATNTCC 
    TTTTCAGGTA CTNCNGCACC TGAANACACA CCANAACNTG CAATGCNAAT 
    GGAGGATGTT NCTANATGCC TNTNNATACC NAACTATCTA AGNTTTNTGC 
    CNACAAAGAN TTTTCTNCTA TCGACGCNGC NTGCNCANAN TATANTGATG 
    ATGGTNCCGT GCTCCCTAAA ANAGAGNGAC NATACATTGT NATNNAGGAT 
    GNGAAATGAC TCGNTNNNAC CNCCNTNTGG TCANTGTAAT ACTGCTGNNT 
    ATAAAAGAAN GNNACNAACC CNTATNCTTG ANNNGNANNC CCCCCCGGGN 
    NAGNGACTCN CCCCCGTGGN TGGATTTNGA ANNTAAANGN NTTTCGTTTC 
    NGCCTTCCCN GCCCTNAGAN TAAGNTTTAT NACTTCNTGT TCNTAGACTN 
    GAAANGGGAG NTTNTNTTNT TANCNTANAA ANAANAATCT TTGGGCTACC 
    GAGTCCCNCT TTNGGGGGGG GTNTTCTTTT TTTTTCGGCN TTCACNGCGN 
    GGGGGTGNNG TTNNCCCCCC CCCCCCGTNA GANNCNNNCC NCCNNANGGG 
    GGGGNTTTCC NNNANAAAAA AANANAATTT TANAAAAANA CAAAACTTNT 
    NCACNATTAA TTTTGTTTTT GGNGAAACAN AANCCCAACA TTTTTNCNTG 
    GANAAGAAAA NNTNNACCCT TGNAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8769927 [Map]; Strand: c
      • AT1G24800.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 1; Position: 8784306 [Map]; Strand: c
      • AT1G24881.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    3. Chromosome: 1; Position: 8806835 [Map]; Strand: c
      • AT1G25055.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    4. Chromosome: 1; Position: 8821213 [Map]; Strand: c
      • AT1G25150.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5103-1 - 3-prime edge 
    TCTGAGAGCG GTGCGATCCA CTTGCAAATT ATGGAACGCT TTAACCAAAG 
    ATCGGGTTCT GGGTAAAGCA GCGGCGCAGT TTTTGGGGTT TATGACGATG 
    GATTCAAAGG TCTGTTCAGT TAGATTCCAT CTCCGTCGCA GCAAGGAGGA 
    AGAAGAAGAC ACGATGGATC TATCTATAAA GCAGGTAGAT TTGCTTAATC 
    AAGTCGAGAT ATCTAGAGTG TATCACTGCG ACGGCTTGTT GTTATGCGTG 
    GCTAAGGACA ACTCGACCAN GCCNNGGNCT GGTCCAACCN GCCCGGNCCG 
    TNGACCACAC NNGCCCTANN AGNCNNGNNC NNNANCCACC CGTNCCNNNN 
    A

AT1G24800.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24881.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25055.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25150.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25055.1).
Link
InterPro Scan - TAIR

AT2G10230.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, replication protein A1
Link
InterPro Scan - TAIR

AT2G10232.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR