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54-5104-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1042511 [Map]; Strand: w
      • AT2G03450.1 - [+] show detail - purple acid phosphatase 9
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-5104-1 - 5-prime edge 
    GNGNAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TGTATCACAT ATCGGAGATA TAAGTTATGC 
    ACGAGGTTAC TCGTGGATTT GGGATGAGTT CTTTACTCAG ATTGAGCCTA 
    TTGCTTCTAA AGTGCCTTAC CATGTATGTA TTGGTAACCA TGAGTATGAT 
    TGGCCTAACC AGCCTTGGAA ACCAGATTGG GCTGCTTATG TTTATGGTAA 
    AGATAGTGGT GGTGAATGTG GTGTACCGTA TAGTGTTAAG TTCAACATGC 
    CTGGTAATTC AACGGAAGCT ACTGGTATGG TTAAGGGACC TCAAAGTCGG 
    AACCTTTACT ATTCTTATGA TATGGGTTCT GTTCATTTCG TTTATATTTC 
    GACAGAGACT GATTTTCTTA AAGGTGGGAA GCAGTATAGT TTTTTGAAGA 
    GTGATTTGGA GTCTGTTAAT AGGAGTAAGA CACCGTTTGT TGNTGTNCAA 
    GGGCATAGAC CTATGTACAC TACGAGTAGG AAGATCAGAG ACGCTGCTAT 
    NAGAGAGAAG ATGATCGAGC ATTTGGAACC GTTGTNAGNG AAGAACAATG 
    TGACNGTTGC TTTATGGGNG ACATGTACAT ANATANNAAA GGTAANAACN 
    ANNNAGNNAN CAATANNNGN NGAGAACNNA NNGAANGNNA ANACANNNTN 
    ATCNAGNNGN ACGCNAATGG CNCGGCAAAA GANNNCAANN CNAAATNANG 
    GGACCCANCA AN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9867735 [Map]; Strand: c
      • AT4G17740.1 - [+] show detail - Peptidase S41 family protein
        Distance: 0; Region: exon10 (CDS)
      • AT4G17740.2 - [+] show detail - Peptidase S41 family protein
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 54-5104-1 - 3-prime edge 
    ATCACAGGCT TATCATCACC TAAAGCTTCA ATGTCTCTTA AAATCCATTT 
    CACAGTTGAT AAACTTTCTT CTTCTCCACG GATAAATGTT GTATAAGGTG 
    TATAACATCC CATATCACCA AACATGAAAG CTAATGTTTC TATTATGATA 
    GCTGTGGATC NTGAAATTCT TCTAATTCGT TATATGTANC GGTTTATGAG 
    GNCNATNACC AAAATTTAGC AATCTCAATT CCTTCTGGGA AAGAACCTCC 
    ACTGCAGCAA GAACAATNTT TTTAAGGAAA GGCTGTTGCA AAAGCAAAAA 
    AGAGTTTATG TTCTCAAANA ATCATCACCT ATTGTCTCGA AGGTCCAAGA 
    CGAATGCGTT TACATTGTTG CCTCTGAAGG TTTCAATAGC TNCCCTTACC 
    GCACCTACAA AAAAAGNGTT AAGACTTTNA NAGATAATAA ACTANAGAGN 
    AGATAAATTT GTAAGAAGGA ATCAGNANTG CCGNGGAATA CATACTNNAA 
    GCATTTTGAT TGAATGNTGN TAGCTTGATA TAGCCNNTCT TAGGGGAGNN 
    ACTCCCANAG CCNGGANGTT CACATACNCN NGACTTCCTG GATTNACAGA 
    NNCCCGCTCT CNCCTGANNT AACAACAATN GTANNNACCN NANGANCGTG 
    ACNCCNAANA NNNNGGNGGG NNTGAGANAA AACNNNNNAN NNNANANTTN 
    NNNNNNGGGC NANGCNAANC NNTNGNTNCG NGGGN

AT2G03450.1

Model type
Protein coding
Short Description
purple acid phosphatase 9
Computational Description
purple acid phosphatase 9 (PAP9); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: Purple acid phosphatases superfamily protein (TAIR:AT1G13900.1); Has 1726 Blast hits to 1712 proteins in 363 species: Archae - 3; Bacteria - 511; Metazoa - 201; Fungi - 77; Plants - 732; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17740.1

Model type
Protein coding
Short Description
Peptidase S41 family protein
Computational Description
Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17740.2

Model type
Protein coding
Short Description
Peptidase S41 family protein
Computational Description
Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9160 Blast hits to 9150 proteins in 1973 species: Archae - 0; Bacteria - 5658; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
Link
InterPro Scan - TAIR