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Mutant Lines
54-5108-1

54-5108-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 26426675 [Map]; Strand: c
- AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
  Distance: 0; Region: intron4 (CDS)
- AT5G66100.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
  Distance: -814; Region: promoter

GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC AAGTAATTCC TCAATTTTAC CTTCAGACAA ATGCCACCGG 
ATGTTGGATA CTTGAGTCTC ATGCTCCGAA GATGATTCTC TCTTTTCTTC 
GTCAATGACT GAATCAACAA CGGTGGTCAC AGATGATCAA CACGGCTATA 
TAATTCATAT GATACATAAG GGGATATTAA TGCAACACTA ATTGTTCTTA 
CCTACAACTG TGATATCAGC TCCATACTTC TTTGCCAAGC TGGTTGTTGT 
AGCAGCAGCC TATCAAATTA AGTGTAATCA GCTTTTTTGT TTGGTGTCAA 
CATGTTCTCA AAAAGATAAC AAGCTAAACA ATAACCTGTC TGGTGCCTTC 
AGAAAGATAA GGATTCCGAT CAATCACCGG CAGGAGAAGA TGCTTCACAT 
TACTGAATGC GTCTCCCACT CCCACTGGAC TTGGACTAGC TTCTGCTTCT 
TTTGCCTGCG CCTTTACTCG ACCTAAGCTA ACCACAAACT AATCATTGTT 
GGCTCATCAA CAAACTAACC ATATCAACAA CTACTCATTA CGATTGTGCT 
AATTTGAATC ACTCCCCTCT TCGTTGTCCC AAACTATATT AAAATTCAAA 
CTGGAAATGC GACTGTACCC AACAAAGGTA GAATTGGACT ATTACGTTTA 
GGAGAAGCAA CTCGTATTCC AAATAAACAG AGAAAAAGAA GAGAAGATAC 
CTTTGAGAGC G

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 26448229 [Map]; Strand: w
  - AT5G66170.3 - [+] show detail - sulfurtransferase 18
    Distance: 0; Region: exon3 (CDS)
  - AT5G66170.1 - [+] show detail - sulfurtransferase 18
    Distance: 0; Region: exon3 (CDS)
  - AT5G66170.2 - [+] show detail - sulfurtransferase 18
    Distance: 0; Region: exon3 (CDS)
  - AT5G66180.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Distance: -709; Region: promoter
  - AT5G66180.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Distance: -710; Region: promoter
  - AT5G66180.3 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Distance: -726; Region: promoter
Flanking Genome Sequence: 54-5108-1 - 3-prime edge
```
ATTTTAAAAC GGCTGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
AGCTGGGTTT AGAAGAGAAG ATACTTGCTC CAAGAACTCT TGATTTTTCA 
CTCTACCTAA GAGTAGAGAT CACAAGGCTT TAACTCATGT ACTGGTTGAT 
ATCTCTAATT AAAGGTGATT GATATTTGAT TTACCTTGAG GTGTGTTGAG 
CATGTAGGGA ATGTTGACGA TCTTAGCTGC CTCACAATGG CCTCTCCTAA 
ACTCGTCCTG AGTCCTGCCA TGTGCAAGGA TTTTTCATTA ACAACCGCAA 
CAGCTGGTAC ATGCATGGTG ATATGATAGA ATAGATCAGA AGCTCACCTA 
ACGTCAAGAT ATTGATGCCC AGACTGGAGG AGAGTCTTGG CTTGGCTCAC 
ATCTACACTA ACAACTTCTT CTGCCTTTGT GCTGGAGGAG ATTGATTGAG 
ACATCTTCTT CTCTACCTCT TCTTGTCAAA CAAAAAGATG AAGAAGCT
```

AT5G66090.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66100.1

Model type: Protein coding
Short Description: winged-helix DNA-binding transcription factor family protein
Computational Description: winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66170.1

Model type: Protein coding
Short Description: sulfurtransferase 18
Curator Summary: Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description: sulfurtransferase 18 (STR18); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1); Has 200 Blast hits to 200 proteins in 47 species: Archae - 2; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66170.2

Model type: Protein coding
Short Description: sulfurtransferase 18
Curator Summary: Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description: sulfurtransferase 18 (STR18); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1); Has 1280 Blast hits to 1276 proteins in 450 species: Archae - 27; Bacteria - 889; Metazoa - 24; Fungi - 9; Plants - 170; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66170.3

Model type: Protein coding
Short Description: sulfurtransferase 18
Curator Summary: Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description: sulfurtransferase 18 (STR18); FUNCTIONS IN: thiosulfate sulfurtransferase activity; INVOLVED IN: aging; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1).
Link: InterPro Scan - TAIR

AT5G66180.1

Model type: Protein coding
Short Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8827 Blast hits to 7075 proteins in 2181 species: Archae - 455; Bacteria - 6424; Metazoa - 542; Fungi - 251; Plants - 202; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66180.2

Model type: Protein coding
Short Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 2637 Blast hits to 2540 proteins in 1031 species: Archae - 209; Bacteria - 1812; Metazoa - 180; Fungi - 59; Plants - 92; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66180.3

Model type: Protein coding
Short Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8458 Blast hits to 6982 proteins in 2152 species: Archae - 444; Bacteria - 6084; Metazoa - 538; Fungi - 249; Plants - 190; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Link: InterPro Scan - TAIR