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54-5114-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22393710 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: -229; Region: promoter
    Flanking Genome Sequence: 54-5114-1 - 5-prime edge 
    AATAGAAGGG TAAATCGGGA AATTGAAGAA AAGAGAAGGG AGTTTGTAAT 
    AAGAAGTTTG CAGAAACGGG CAAGGCTCGC ATGTTACATT GTCGCTTCTT 
    CAACTTCATG CATACGCNTT TTATTAGATT TTTTTCTCTT CTTTCCGTTT 
    TCCAGATCAA AAATTAAATT TAAGTTTTTT TTTTNTTTNG TTAACCNGTA 
    GGANAANGAG AAGGAGAGAG AGAGAGATAA NTAAANTTTA TTTTAGTGGC 
    TTTNTNAATC TTNTTNGAGN CCAAATNTNA AGTNCNTNGG GGGANAGNAA 
    NGCTNGNAAA TCCCNCTNCT NTTNNCTTTA ATTNCNCTCT TNTTTTNCTT 
    CTNCTCNGTC CTNGTTNTGG AANANGGANA GTTNCANGNN CNGGGTTNGN 
    TTNAAAANCT TCNTTANCGG AAAAGCTNCC ANCCNGGNCC GTNANCCACC 
    GTGNCCCCNT ATAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22393594 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: -345; Region: promoter
    Flanking Genome Sequence: 54-5114-1 - 3-prime edge 
    CTTCTATTTA AGCTTAAAAC TTTCCTGTTT TTACACCCGA AATAGCAGAG 
    ACGCAACGCA GCTGTCTTTT TTTGTCTATT TCTAGGACGG GTCTTTTAAA 
    CTTCTTAATT TTAACCCAAA AAAAACAAAA CAGTTTTTTT TAGTGAAAAG 
    GGTATTTTCG GAATTTTAAA ACTTTGCTGT TGTACGAGAA AAGTCTTGAG 
    GAGGAGGTTT GTTTTGTTGT GTTGTAACGA CNAACCAGCT AAACAAAACC 
    GTTGTCCAAA AAAATGTTAA CATCTCTTTG CTGTGAGTTT TACAGTACGT 
    GACAGCCACG TACTAGTCCA ATGANGGTTG TTTTTAATAA CTCNCACCGA 
    GCAGTAACTT TAACAAATNA GTTAATTAGA ACANNATTCC ACAATAAATC 
    AAAAAAATTA AGGTNGANTG CANTTGTNAT TNNACCATCT NACGTNCTTA 
    CTATTAAATA ACAGATNCAC AGTATTTGTT CTATANCAGA TNANNNGGNG 
    CNNGGGNNCC CTANAATCCC CNATNNNNAN NNCNTGCGAN GNGGGANNAA 
    TTNTANNCNA TACCCCTATG NNNTTTTNCC CCTTTTATCC NGGATNTTCC 
    CCNNNAAANA AACCCCNNNN NCCANANTTA CNGNNGGNNN GGGNAAAAGA 
    ACNAANNNNN NANCCCCTTT TNANGGGNNN CNCCTTNNNN ACNTTTAAAG 
    GGGGGCAAAA AAATTGGTNN TTACAACAAA AAANNGGNAT N

AT3G60580.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR