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54-5115-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23081332 [Map]; Strand: w
      • AT3G62360.1 - [+] show detail - Carbohydrate-binding-like fold
        Distance: -769; Region: promoter
      • AT3G62370.1 - [+] show detail - heme binding
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-5115-1 - 5-prime edge 
    TTTGTAGGCA CTACATGATG GTCGAGATAT CTACTTTCTT CTGGAGATTG 
    ATGGAAATTA CGCTTATGAT AAAGGGTAAG TGTGTCTTTT ATTATTTGAT 
    TATACCCTTT CTAGACCTCT GCATGATCCA AGAACCGGTG ACCATTCATT 
    ACCTTAAGTA GATAGTAACT GCGTACATAA CTTCAAATTG CAAGTCTATC 
    ATTAGTTGTA GTGAACTGCT TGCTTCTTTA AATTCAGTGA AAACAACAAG 
    TGTCCTTCAG TGGCTCTCAT GTTCCAAATT GGTGATCAAG CTACTTATCA 
    CAATGTAAGT TTCTCATTTG GCTTGAGTAT TTTGNTCAAC TAAACAACTA 
    ATGTCAACCT TCTGGNCCAC AAGATGGGTG GTTGTAAAGA AGGGACAGAC 
    TCATGTACCA GCAAGGCTTG CAGAGGCTTC NAGGTTGATA TTATGCATTN 
    CTCCATTGNA NATGCTATAC CAGGACGGCT TTACGGNGGT AATCCAATAG 
    ACANCGGGGA ANGAANGGAG GTNACANGNG ATCANGAAAN ACAATANCGA 
    NAGATNAGTA NCTANCNNNT TTANTANTGG TGANTGANCA CNGTGGAGNA 
    NAGNNCGTNN NACTCCNNAN ACAGACAANN ANAACAANAA CAANGNNAAC 
    CNNNAGCCAA CTANANCCNA NNGNGACCCA NACANATAAC ACANAACC

AT3G62360.1

Model type
Protein coding
Short Description
Carbohydrate-binding-like fold
Computational Description
Carbohydrate-binding-like fold; FUNCTIONS IN: carbohydrate binding; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784); Has 321 Blast hits to 256 proteins in 98 species: Archae - 6; Bacteria - 117; Metazoa - 138; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62370.1

Model type
Protein coding
Short Description
heme binding
Computational Description
heme binding; FUNCTIONS IN: heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c-552/DMSO reductase-like, haem-binding domain (InterPro:IPR019020); Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR