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54-5120-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19541232 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5120-1 - 5-prime edge 
    ATCCAAAGCC GATAAAGCCA TGGTTCGTAG CGATTCGTCC GATCCGTTAC 
    ATGCTCAGAG AACAGAGACT CGTCTTCGTC CTCGTCGGCA TTGTCATCGC 
    CACATTAGGA TTCACAATCT TCTCCAAATC ATCCAACCAC CAACCAATTC 
    CTTACGACGT GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19541339 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5120-1 - 3-prime edge 
    CTTTGGNTGA TAAGATGACA NCTTCTGGAT GCTCTATATA ANNGGGGCCT 
    NGATTGGCAN TGCATACTGC ACATAATGAT CACAGTNCCT GGCTCNNCGA 
    NCANTGCANT NCNGGANGGA GAAAGTAATC GGTGATTTTA CCGAGTCGAA 
    CTAGCCGGAG ACTGAGTCGA

AT2G47650.1

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47650.2

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link
InterPro Scan - TAIR