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54-5141-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1529118 [Map]; Strand: w
      • AT4G03445.1 - [+] show detail - MIR447A; miRNA
        Distance: -748; Region: promoter
    Flanking Genome Sequence: 54-5141-1 - 5-prime edge 
    CTAATGATGA GCCATGACCA TGGATATAAT TGTACGGCGG CATCACACGG 
    CCGCAAATAC CCGATTAGCT GTCTCAGCCG AACCGCCCAT TTTATTTTAT 
    TTTATTTTTT TGTCATAATT TGGACAACTG CCTACTAAAA AAGTCGAACT 
    CAACGTGGTG TTCACAATTG GGCCTATAAA GTTTAACACA AATGGGCCCA 
    GTTTTTAGTA ATCCCTTTTA TCTCAGCGAC GCCGTTTATC TAACTATCCC 
    ACATTTTGCT GCAATGTGAA GAATGTTTTT TTTTTTTTTT TTTTNGGGTN 
    NAAGGGGNNN ANGNNAAAAA NNTTTTAANN NANAANNNAA AATNNGNNNN 
    ANAAGTNCNT TTTTTTTNAT NAANAAGANN CCNNCNAANN NTTTTTTTTT 
    TTTNANAAAA AAAAANNCCG GGNNNNGGGG NGANACANAT NAAANANCNT 
    TNTTANANAN NNCAGAGNAC CNCCAGNNNC NNGTCTNCGN TTTANNCAAA 
    NNNNTTNTTC NNNNCGANAN NAGGAGGGNN TNNNNTTTTT TNAAAAAAAN 
    CTATNNNAGG NATNNNAACC CNTTNGNANA TAATNNNCCN GAAAAAAAAA 
    AGGNGGGNGC NNNTNTNANT TTTATTNNAG AANNANTNAA ANNNAGATCA 
    TNATNANCAA ACACGANGGA TANNGNGGGN GAAACAAGCT NAAAACGAGC 
    NTTNNNCAGA NAANNAAGNG CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24811990 [Map]; Strand: c
      • AT5G61740.1 - [+] show detail - ABC2 homolog 14
        Distance: 0; Region: exon16 (CDS)
    Flanking Genome Sequence: 54-5141-1 - 3-prime edge 
    GNNACACNNG AATGNTCTGG NTTANAGAGA TANNCAGGGA AAGATACNGA 
    GCTAAGCGAT ACCCCNTGNG GATNAAGTTG CTGTCGTNCA TNAACAGGCC 
    NTGTNATGTG TACNNTGATC NANNNATCCT GCTCGTAACN GGATAATGAN 
    TTNNGGANGA CNNNCNCNNT NNCGTNATNN CTGATANGNT ACTGTNNCTG 
    ANNNTCTTNG TTACATGGNA CNNGNGAANC NTCATCTCTN GANATNACNA 
    ATGTCACAAG NCTGATNTCA TTCATGGTTG TGNTGNANCC ANAGGTCNAA 
    NCANGNNNTT NATNNATCTT ATTCNNGGNT GCATNTCTTN AGTGANTTGC 
    NCAATCAANT TCAAGGGAAT AGGNTNCNNN NAANCNNTTT TCANGANGAN 
    GNNCTNGGAT GNTCGCTGTG TNAGTNCTCT TTCCTANGCA CAANCTGNTG 
    TNTNCAANNA TCNAANNNGT TTCCTCAGCA CNNNAANCTC AAAATCAGAT 
    NNCCANCCCG GGCNGTCGAC CACTCGGNCC CTGTTATTTN ATGGTGGAGA 
    AGGCCAAAAG CAAATTCACA GTTTTTGCTT GGGGACTCGC CGATACAACT 
    CTGGAAGACG TCTTCTTCAA GGTTGCTCAA CTGCTCAAGC CTTCACTATT 
    NGNCTTATGA TTCATGCTAC TTANGGCATC ACTGGNGGTA TATTATTCAA 
    GTANGGCTTA NTNTTGNCAA TTTATGCCTT ACAGACNCGT TAN

AT4G03445.1

Model type
miRNA
Short Description
MIR447A; miRNA
Curator Summary
Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGAGAUGUUUUGUUG
Link
InterPro Scan - TAIR

AT5G61740.1

Model type
Protein coding
Short Description
ABC2 homolog 14
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 14 (ATH14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 16 (TAIR:AT5G61700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR