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54-5142-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640165 [Map]; Strand: c
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-5142-1 - 3-prime edge 
    CAAACGGCCA TAAAGAGAAA TGAGGATGTT GTAAGTAGAG ACAGATGGAG 
    TAGAAGAGGA GGGTCCGTCT TGTTGAGAAT TGAAGTCAAG GAAGAGCTGC 
    TCGCAATGAT GAGACAAACC GTTGCAGAGG TAAGCACCCA TCAAAGCATT 
    GTAGACGGAG GTGGTCTTGT TTGCAGACTC GTGAAACAAG GAAAGGG

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR