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54-5146-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9544277 [Map]; Strand: w
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5146-1 - 5-prime edge 
    TACCATGAAT GTATTGATTG ATCTGCGATT GAGCTCCTTA AGAAGATGGC 
    TGAGGAAATT CTTGCGAACA TCTTCCCCAC TGAAGCTTGG AAAAACGTCA 
    CTGCCAGAAG AAGAAGTCGC CGCCATGAAA GATGATAGAG AGAACTCAGA 
    GAAGAGACGA ATATTTTTAA GAGAAGTAAA TCAGCNAGAC ATAGTGTGGG 
    AAAGAGAGGA GAAAGTTAGT CNTCCTTTCC TCNAAGACTT GCGTAGAATA 
    CTNACTGGGC AGGANATGNA ATTAANTGGC NAAANNAAGN TCCNGGGGNG 
    GGGACNANTG ANACAAGTNG GATAAANAAA CTANGCCCTT AATTTGTTNN 
    AAAGNTTNNN TCCNCNGGNC CCNAANNTGT TTTTTGNANA NNGNATNGAN 
    GGNGNTGNNN GGNGGGGGGG GGAAGGGGNG NGCCAAANGT TTTNAAANAA 
    NACNANTTNT NCCCCCNCNN NANANACCGA AAAAAACNCN NGCGNGCGGG 
    AAAANAAAAG GGGGGGGGGG GNNNCCCCCN CCCGCNNNNT TNNAAAAAAA 
    ANANGGNNGG GGGGGGGGNG GGGGGGGNGN NGNCNNCNAN NGNGGAAAGG 
    GGNNNGNNNG

AT4G16950.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR