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54-5172-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23425383 [Map]; Strand: w
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: 0; Region: intron1 (NonCoding)
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-5172-1 - 5-prime edge 
    GCCCAGGGCC ACAAATTCGA TTACATAGAA GGGTTTGTGA TAATAAACAG 
    GACAGGCCTC CTGAACAGCT GGAGGTTGTC TTTCACCGCA GAAGAGCCTT 
    TAGAAGCAAG CCAATTCAAG TCTGATGGAA GGACTCTGTA TTGTCTGGAG 
    CTAGCCAAGT ATTTGAAGCA AGATAACAAA GACGTAATCA ACAAGGTGAG 
    AAAACAGAGT AGAAGCAATC GGTAGAATCT TCTTTGGTAG ATGACATTCA 
    TTGGAACTGA AAATATATAT ATATATTTGT CCAATCCAGG AAGTGAAAGA 
    AACATTATCA GAGCTAAGCT ACGTGACGTC GACACTGTTT ACAACGGAGG 
    TAGCATATGA AGCATTCTTG GACAGGGTAC ATGTGTCTGA GGTAAAACTC 
    CGATCGAAAG GGCAGTGGGA GGTGCCACAT CCATGGCTGA ACCTCCTGGT 
    ACCAAGAAGC AAAATCAATG AATTTGCAAG AGGTGTATTC GGAAACATAC 
    TAACGGATAC AAACAAGGGC CCAGTCATCG TCTACCCAGT GAACAAATCA 
    AAGTAAGAAA GAAAGAAAGA AAGAAAGAGC TAGTCATGAT TTTGTCTCTT 
    TTCACTTGTT GACAAAACAA AAGCATGTTG GTGAGCAGGT GGGACAATCA 
    AACATCAGCA GTACACCGGA NGAAGANGTA TTCTACCTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23425267 [Map]; Strand: w
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: 0; Region: intron1 (NonCoding)
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-5172-1 - 3-prime edge 
    CCCTGGGCAG ATATTAGTTG CTCTTGGTCC TTGGCAAAAG CTGCAAAATC 
    CAGGTATAAC ACTCTTATCC ATTTTACCTG TCCATTATAC AGAGTTAGGA 
    GGACACACGC GTGTTCAGTT TTTAAGTTTT TTATTTATTT ATTGTTTACC 
    ATGGTTGGTG CTGGTTCCAA TGCTATTCTT GCCCGCGTTA TGATGCCAAA 
    CTGACCTAAA CCACCAAGAA CACCATTAAA TAAGTCGCTG TTCTGCCTCT 
    TTGTACAGTT TAGGATNTAG CCTTTTCCTG CAGGNCAATA AATAGGCATG 
    ACATTANTGG GNNGCTATNC TCGGGAATCN CTNNATGTTG TTAATAGGNA 
    CCANCCATAT AGAGNCTATG CTGNCAAAAC ACAAATACTG CAACNCTCAA 
    CTAACCTGTG AAAANNTCCA NNNGATGANC CTTGNGNGAG GTGNGGNCCN 
    NATANGAAAG NCNAGGACNC CTTNTTNNAN ANATNAGNNA AGANNTCANG 
    NGGAGGGNAA TTNCGGGNNN TNGGNNGGGG AAAAAGNGGG NGGGGCNCGN 
    ACTCNTANGG GGGAGGTCAA AAAAGAAAAA GAAAAGGNTG ATNNNNACGN 
    NNATTGTTCN NCTNCNNCNA GGGNNAGGNG NGGCNGTGNN NGGNNTNGGN 
    NNNNGGNNNN NNNANAANCN CGTANNNNNN TGNNNNCNNG NANAATNNNN 
    NNCGNNANAG AANCCNNTAN AACAAANNNN NNNACNGAAN AGANANAG

AT3G63440.1

Model type
Protein coding
Short Description
cytokinin oxidase/dehydrogenase 6
Curator Summary
This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR