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54-5173-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23356312 [Map]; Strand: c
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -1152; Region: intergenic
      • AT3G63220.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 1080; Region: intergenic
    Flanking Genome Sequence: 54-5173-1 - 5-prime edge 
    ATCATCACAA CGTCATAGAA ATAGCGAAAA CCGTAGAGGA GGAGGAGGAG 
    AGGACCTACA CACTCCTGTC CACATCCTTT TAGCCCCACC GTGGGTCTAT 
    CACCTAATTC CTTCCTCTAT CGTATTATAT CCGAATACNG TTACTTTTCT 
    TTCCCTACTA GGCTACTAAG TAATATTTAT GTTTCCTTTT GCATTGATTA 
    TTTGTAAGTG AAGTTATGAT TATACATAAT CTTGCAACTT GAAACTCTTT 
    TTGTNTTTTC TTGAATCTTG GTATGAATNA NAAGGTGACG AGCTTAAACA 
    ATGAGNANGC GATAGTTAGA TGGGATTCGA GAAAAACANG ATCAACNCAA 
    TAAAAGTGGT TCGACGAGGG GNNGNANAAN AAAGGGNNAA ATAAGGGGNG 
    GGGGGGGGTN TANNNNNGCC TCNGTNNTGG GNTNNNNCNN ATNTNNGNNT 
    TNAAANGNAA GCGGGANGGN GGNGGGGACN ATAACAAGNN AACGGTTANA 
    NAGAAAGGNA AANNNNNGGN NNNTCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23356425 [Map]; Strand: c
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -1265; Region: intergenic
      • AT3G63220.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 967; Region: intergenic
    Flanking Genome Sequence: 54-5173-1 - 3-prime edge 
    GTGATGATCA NNNNGCCCGN CCNTTCNCCN CCNGTNNATT CAAGCTTTTA 
    TTTTCTATGT TTTGTTTAGC CAAGGAAATT TTGTGTATTT GTGTCTTGTT 
    TTCATGCCTC AAGGTCTCTT CTTGCCTCAA TTGGTTTTCT CTTTTTTTTT 
    TNTTTTNCTT TCGGATAAAT CTAATTTNGN AAAAATCCAT NTNATNAATT 
    TTNTTNCAAA NAAAAAAAAA CAANNAGCNA CTNCTCNTCC NTATATCCNN 
    TNNAATGNGC NNTTNNTTTT AAANGNAATN AGGGGGGNCN NNAANCCCGA 
    AATNGNGTNT GNAACCCNTT CNCCNTNANA ANNTNGGAGN NNATTTNNNT 
    TNNNGGAGNN NNANNANAAN CNCNNCGGTT TGGTTTTTGG NGNCCCACCC 
    NCCCAAGCGN NANANAAAAA ANAAAGGGNN TTTTCANNNN AAAANNNNNN 
    GGGCGNAAAA NAAAAAAAAA AAAAAGTGGG NANGGGNAAN ANCACANNGN 
    ANGNNTNCNT NTNNNAANAA AGANNGGAGN NTNANTGGAN GACGANNANG 
    NGGGNGAGAA AAAAANAAAG ANGGGGGGNA GNNACCGNCC CCNCCCTCTT 
    NTCNNGNAAN AAATNGATNG AGNTTNNTNN NGNGTCCCNG GNGNGNGGGG 
    GGANTCCGGC CNCGNCNNCA CCCNGTATNG ANNCGNGGAC NAANATAACC 
    CAAAAAAACA NGNCGGGCNT ATGNGNGGGN GCNGGGGGNN GGANCATNGT 
    NNCCNNGGNC CAAAAAGATN CATGANNAAA GGANNGTGGG NG

AT3G63210.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Curator Summary
encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63220.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G16250.1); Has 6493 Blast hits to 4467 proteins in 250 species: Archae - 4; Bacteria - 460; Metazoa - 4606; Fungi - 8; Plants - 1152; Viruses - 24; Other Eukaryotes - 239 (source: NCBI BLink).
Link
InterPro Scan - TAIR