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54-5179-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 221897 [Map]; Strand: c
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: -423; Region: promoter
    Flanking Genome Sequence: 54-5179-1 - 3-prime edge 
    GATTTACCGA CCGTTACCGA CCGTTTTCAT CCCNCGACAC ATCTGACNTA 
    CAACATTTGC CACTACAATG CACGACTGTC TTCGGATTAA TACATTAATG 
    TTACATCGTT AGTATCAATC TTACAGATTA TAAATAGCTT AGCCGATTGT 
    TTAAGATAGT ATTATTCTAA ATTCATATAC ACTCGTGCAA GTACANCAAC 
    ACACTAAAGT TATTAAATAA TAAACACATT TGATGTAGAT AAACTACTTT 
    TTTTAGTGAC GTGACTTTAC AGGCCCAATA ATATATTCTG AAAAGCCCAT 
    AGTNATATTC ACAAAAGCCC CTTGATAAAG NTGCAACGCG CGTACGNTAT 
    CTGACGTGNN AGGTCACGCC ACGTGGATNA GAAAAAAGTG GGNAAAGAAC 
    NANACCNCTT GGGGANTCAA CGGNNNTNGA GTGANNCNNG NGGANTNTCT 
    TGNGAGGNGA ANNGNGTNNN NGNCGAGANC AAGNGNGNNC GTGNATGNCC 
    CNGANGNCNC NCNGNATAAC NGNTNNNNNT ATGNTNCCAT CNNCACTGAA 
    NANNCAANGN NTGAGGTGGG NNNGTNNGGN NGGGGGGAGN GNTNTTTTTN 
    TANNNNNNCG CTCGGCCGGG TNNCNACGGT NCGTNGNGNA GAGNGNNCAN 
    NNAAGNANTN GNGTATCNTN NANCCANNGC CCGGNNCGTN ANNGNCNNGC 
    CTNCNGCCGG NNCCNNGNNG GACGAGGGCN GNGNCGTNGN NNNGCNCGTC 
    NNGNNTNGNN NGTGTNCGCN GNGNGGNCGG GANGNTNCGG GTCNTCTTTN 
    CNNCCATGTG GNNNNNTCGT ACGNNNNNGN NANGAGNAAA G

AT4G00490.1

Model type
Protein coding
Short Description
beta-amylase 2
Curator Summary
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR