1. Home
  2. Mutant Lines
  3. 54-5216-1

54-5216-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10377145 [Map]; Strand: w
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 3; Position: 22769056 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5216-1 - 5-prime edge 
    GTCTTGTGAA CCAAATCAGA TCACAATGGA GATTCTAATG GAGCGTCTCT 
    CAGGTTCTGA TGAGTTAGTT AAGCTGAGGA AGTTTATGCA AGGCTACTCT 
    GTTGCTTCGC CGACCGAGAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22769172 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 5; Position: 10377029 [Map]; Strand: w
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5216-1 - 3-prime edge 
    CACAAGACTG TTCGACCATC TCATCCATCA GTTTAAGTAA TGTCTCTCCT 
    TGGGTTTTCT CGTTAAGACA CTTAAACAAG GCATTGTAAG TTTCAACATT 
    AGGTCTCACC ATCTTCATCT TCATTTCCTC TTTCAGAGAG AGCGCCTTGC 
    CCGAAATTCC CCAGCTTAGA AAATGCGTTT ATGAGAATGT TGTATATTAC 
    AGTGTTCGGA TTGACCTTTG AGTGCAAACC CATGTCCTTA AAGAGCTTCA 
    ATGCTTCGNN TAATTCGCCN ACTGAGCAAT AANCGTNAAT CACCGNTCCC 
    TATGTNNTGA CAGNCGGGGT CTAANCCANN TNCTCTCATC TGNTCCATNN 
    ANTCNNTGNN AAANTNTNNG AAGGGCTTGG GGNNTACCCA AAAANAAAAA 
    NNAAANNGGN NGNNNGGTNA TNGANNCANG GGTNNTTTTC CNNNTTTTNN 
    CCTTTNTTGG TNAGANNNAA AAAANAAGAT NANGGGGGGT GGGGGGNNGG 
    NGGNAAANGG GCGNNNTNGN CGTGNNAGNG NNGCGNANNA AANANNAAAN 
    NGCCGNNNNG TATTCNTNNN NANNAGACAA NAAAGAGGGG NNGCGGGAGG 
    GNGNGGGNGA GAANNAGGAC CNANGNCNTG GGGGTGNNGT GNTNCGNCCC 
    GNGNNNGNGG GGGGGNGNNG TNANNNTNAN CG

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28460.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR