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54-5220-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26457178 [Map]; Strand: w
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon10 (CDS)
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron11 (CDS)
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron10 (CDS)
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: 54-5220-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GAGATGCAAT TGCAATGGAA AACAAAAATA
    TAACTACCGC TTCAAGGATC TCAGCAACTC GTGAGTCTTT CAGTTTCCAA
    GGAAGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26457150 [Map]; Strand: w
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon10 (CDS)
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron11 (CDS)
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron10 (CDS)
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: 54-5220-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTATCAGAAG GGAGACGTAG 
    TTTCATAATG AGCCGTTGTG TACTTGTATC TTTGCTGGTC ACAGATTGAT
    AGCAACACTG ATGGGTTAGT GGACTTCACA GAGTTTGTAG CAGCAGCCTC
    TACATGTTCA TCAACTAGAA GAACATGATT CAGAGAAATG GCAGCCTAAG
    GTCAAGAGCA GCTTTTGAGA AATTCGACCT AGACAAAGAC GGGTACATAA
    CGCCTGAGGA ACTTCGAATG GTAAGCTGAA CTAACCTCTT ATCAATATTC
    TCGTACGGTA GAGTAGATGT TTAGGTAAGT GGGTGATGAA ACCCAATTTG
    TTTGTGAATC CTCAGCACAC GGGGTTAAGA GGATCAATAG ATCCACTGCT
    GGATGAAGCA GACATAGACA GAGATGGGAA AATAAGCCTG CATGAGTNCA
    CGGAGACTTC TAAGAACAGC GANCATAAAT TCACNGAGNG CNCCTNGCCC
    TGCANGNCAC AANGAATNTT TNAATAGTAT TTACTACCAG AGGAGTNNNT
    ANAGGANACA NAANGNNGGG GGGNCCGGGA NGNGTNTGTC GGGNCCCCCC
    CCNCNNNNAN NNNTTNNNGN GNGNNNGNCC CCCNNNAGNG GNGGNCGCNN
    NNGGNCNNNN GNGGGNNNTN GNNNCNANAA NNTTNCGNTN NNANANGNGN
    GGANGGNGCC CCCCNCTNCT CCTTNTTGTN NGNGNNNNCC GGGGNNNANC
    GCGGCANNNT TNNGGANNTG NNGNNNGGAG NAAAANNNNN GGNNNG

AT5G66210.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 124563 Blast hits to 121753 proteins in 3731 species: Archae - 157; Bacteria - 14240; Metazoa - 45960; Fungi - 14836; Plants - 27830; Viruses - 455; Other Eukaryotes - 21085 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.2

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.3

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 122907 Blast hits to 120110 proteins in 3700 species: Archae - 157; Bacteria - 14345; Metazoa - 44968; Fungi - 14295; Plants - 27583; Viruses - 455; Other Eukaryotes - 21104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.4

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR