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54-5224-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 752519 [Map]; Strand: w
      • AT4G01735.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon2 (CDS)
      • AT4G01740.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -903; Region: promoter
    Flanking Genome Sequence: 54-5224-1 - 5-prime edge 
    ATCACCGGAA CATTGTTTTG TTCCTCAAGT TGTTGTGGAG AAGCNAAGTN 
    GNCAACCACA TTGTGNNGAG GNCNAGCCAC CTTNGGAGCG NNNGAAANAT 
    NNTCAGGANT GAGCGAGGAA GGACNATCGC CAAGAGATTC ATAANGGGCG 
    CNNCGNTNAC CNCCTTGNAA GAGGGGNNCA AAGGGGCATA CGATGCNGGG 
    GGNGGAANGG GGGNAACACT CCTTNTGNAN ACANGGGGGG GGANTACCAG 
    AAAATGNNGA ANANAAAAAA AGGGGGANGG NNNAAAAAGG AGGNGNNNCC 
    NNNAANNGGG GAAGAAAAAA GGGGGGGGGA NNGGNANGNG NGGGTTTCTN 
    TCTCGGNANA AAGNAANNGG AAAAAANCCC NNNNCCGGTN GGCCTAGGGG 
    GGGGNGGTTA ANGGGTNGGN NCACCTTTGN GNGANGGGGG GGNGCGGGGG 
    GGGGGGACAC CNANGTTNTN AACCCCAATT TTGAACCAAA ANAGNAACCG 
    NNGGGGGNGG GGGGAAANAA AAANAAAAAA AANNTTTTNT TTCCNGGGGG 
    GGGGGANCAA ANCGGGGAGG AANAAAATTN TNTANTTTCC CCNNAACCCN 
    NCNAAAAAAG AANAAAANAA ACCCGGGGGG GGGGNGGGGN CTTNGGGGCC 
    ANAATTANAA NCCCCCCCGG GGGGGCAAAA AANANGGNGN NTAGGGGGGN 
    NCCCAAGGGG AAANCCCCCN AAAAAAAANG GGGTGNGGNN NNAANNNNAA 
    AANANNACCC CAGGNCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 752403 [Map]; Strand: w
      • AT4G01735.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-5224-1 - 3-prime edge 
    CCGGTGATGA CTATGAATCA AACCACAGAA CAGCAGCAAC CTTGTGAAAC 
    AGCCACTACT CACAACGAAT TGTTTCAAGA GATGGATCCA GAGATTGCTA 
    GTTTATTACT TGTACAAAAC ACAACAGAAG AAGATGCTAA GTTTATGGCT 
    TCATTAGGAA ACTTTTAGTT TAAAATTCCA TTCGTTTCTT TATGCGTTCA 
    TTAGTAGAGT GTTATGTCCT ACTTTTTAAT TTTAATAAAT AACCACATTT 
    TTGCATCTTA TGATGAACAT ATTTATATAT ATACTCGGTA TAAAGTTGAA 
    CAAGAGGAGG CAAAAGTTTA AGCAGATC

AT4G01735.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01740.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01930.1); Has 1534 Blast hits to 622 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1528; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR