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54-5233-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7831844 [Map]; Strand: c
      • AT2G18000.2 - [+] show detail - TBP-associated factor 14
        Distance: 1264; Region: intergenic
      • AT2G18010.1 - [+] show detail - SAUR-like auxin-responsive protein family
        Distance: -2058; Region: intergenic
    Flanking Genome Sequence: 54-5233-1 - 5-prime edge 
    ATGGAGATGA ACTTATCTCG GCGCTTGTTT CATCTTTTCA CGATGTTATT 
    GGCTTAGTTA CTAGCTACAA CTTTGACTTT TAAGTACAAA ACAATGTAGA 
    AAGTGTATTA TTTTTAGAAT TTAACCAAAA ACAAATAAGA AATTTGACCC 
    AAAAAAATGA AAATGTGAGT AAAGAAAAGT CAAAAAGATG AGTGGTGTGG 
    GATCAAAGAG TGGGGACAGT GAGATGATGG TGACAGATGG CTGAATTTAA 
    TTGGCACACC TGTGGNGGNT ATAACTCGTA NACACTATNA ATTCATTCCT 
    TANNNGACAT CAACCGAAAG CCCCAACACC TTCTTCTATT AAAGNNAAAG 
    ATAAGGCTTG ANNNTAAAAN CAAAAAGNCT NTGTTNGTNC NNTNNATAAA 
    NCTCACAACA CCCCNNNCNN GNGGNNGGGG GNGCCNNNNG AANACNNGGN 
    NTNGNANNAG GNTNGNAGGN GNGGGGGGAN NNNNANNAAN GGNCNAGGNN 
    NNNGGGANNN NGGGGGAGGG GGNNCNGGGG NNNNNNANNN NNNNGNNTNN 
    NNNNGGGGGG NCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7831960 [Map]; Strand: c
      • AT2G18000.2 - [+] show detail - TBP-associated factor 14
        Distance: 1380; Region: intergenic
      • AT2G18010.1 - [+] show detail - SAUR-like auxin-responsive protein family
        Distance: -1942; Region: intergenic
    Flanking Genome Sequence: 54-5233-1 - 3-prime edge 
    ATCTCCATTA TATCCACAGG GATCATGATG ATCATTACGA TTCTGCTTTT 
    GTTTTTTTAG TTTAACACAC AAATTTTTTG AACAAAACAA TATCATCAAG 
    GACGGTGAAG AAGTAGATGA ACACAAGGCA TCGACCTCGA C

AT2G18000.2

Model type
Protein coding
Short Description
TBP-associated factor 14
Computational Description
TBP-associated factor 14 (TAF14); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: YEATS family protein (TAIR:AT5G45600.2).
Link
InterPro Scan - TAIR

AT2G18010.1

Model type
Protein coding
Short Description
SAUR-like auxin-responsive protein family
Computational Description
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT4G36110.1); Has 1342 Blast hits to 1327 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1341; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR