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54-5249-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26463491 [Map]; Strand: c
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon7 (CDS)
      • AT5G66230.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-5249-1 - 5-prime edge 
    CCTGCATCGA CCACACCGAC GAGTTATCAT CCTCTGGGTT TTGAGTCACC 
    ACAGATGAGC AGTCTGAGCT CTCCCATAAT TCTGATTTAT CACTAAAGTC 
    CAGAAGCAAT GACCGAGTAA TGCTCGGGCT CTTCTCTAAC TCCAAGCTTT 
    CTTCTTTCTC ATCAAACATG TTGCTTTCCA CCACCTGCAA GAATAAAAAC 
    CAAGTTAACA TCTTCTTATC ATTCCCCAAG AATCTTCCAT CTATCAGCAA 
    AAAACATATA CAAATCTAGT TTTACCTGAG ACGGNGCTCT GAATTGTCCT 
    GCAACTACCG GAGAAGTGAT CACAACCTGC ACTTNGTNTG AGAAACCAAN 
    AACTTGGGGG GNGNNNGACN GANGNGGGGG GAGAAGACCC NNGGGNGANN 
    NNNNNNNAGG ANNAAANNGN NNANANNNNN NNNANNNNNN GNNGAANNAN 
    ANNNNNNNNN ANNANGGNGG GGNCCACGCG NNNNNNNAGG GAGANGGNNN 
    ANAGNNNGGG GNCNANNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26463607 [Map]; Strand: c
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon7 (CDS)
      • AT5G66230.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-5249-1 - 3-prime edge 
    GATGCAGGCC AATGCAAGTG CCAAAGACGA AGAGTATGAT GATGAAGAGG 
    AAGAAGCCTA TTCTTACGGT GAGGAATATG ATGAGGAATA CTACGACGAG 
    GAAGAGGANG AANANNANGG ANGGATTGTG GATGGGTTGG ATGAANCNTT 
    CCCATCTTTT TATCNNGNGN AATNCTTNCT TNTGCANTNN NGNGTATTNC 
    TCACCAANAA CCAATCCTCN ANGNGNNNCA AGACTTCTTN NTTTACACNG 
    GTTCCTNCCN TTTATAATCC NNTTTTNCNC TNTTNGGNCC TTTTCCGGAA 
    TCGAACGGGC CGNGGCGTCT TNTTGGTCTT TTTTTTATGA NNNNGGNGGG 
    ATATGNTTCC NNCTCTCNCT TTTTCNTCTA NTATANGNAN GTNATTGTGN 
    NNCNGNCCCC CCCNNNCNTN GNACAAGNTT TNATNAGGNC CTTNTTCTTG 
    CCNNCCCNTC NTTNCANNGN NTTANNNNTG NTGTTNTTNC TNNGGGGGGC 
    CCNNCGCCCA NGAAAAANTT GAANNCCCTT TCCCNGTTCG NGGGCNGTTT 
    TTNTTGTNTN CTNTAATCCN AAAANNAAAA TTATNNNGTT TTTTTNTTTN 
    TTNTAGGGGC NGNCCCCCCA GNNGGNGGGG GNGNNTTNGT TGGNNAANCN 
    AAATNTTTNT TGTTNTTGTG GCNNNNNNCC CCCCCGNCGN NGTNGGNNGG 
    GGNGNGGNGA GNGNCCCCTT TTTCNTNCNT TCTTNTTNTN TTNNNANGAA 
    TCNTNGNNCC GNNNGNGGGN

AT5G66230.1

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66230.2

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66220.1).
Link
InterPro Scan - TAIR