ET103

CSHL Arabidopsis genetrap mutant lines

Original: ET103

Phenotypes

Morphological phenotypes

Original description

  • no cotyledons
Anatomical entity
/structure development stage		 Phenotypes
cotyledon (PO:0020030)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET103

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20140966 [Map]; Strand: w
      • AT3G54400.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET103 - 3-prime edge 
    TGTTAAAGAA CCCTAGAAGA TCATCGCTTT ACTATGTTAA CTTGGTTGGG 
    ATTCGTGTCG GAAACAAAAT TGTGGATATT CCTACAAGTG CACTCGCCTT 
    TGATCCGGCC ACCGGAGCCG GCACCATCTT TGACTCGGGT ATGGACTTCT 
    CAACCCTCCT TAATATTTTT TATTTTTCGC TTGAGAACTG AAAAGTCGTG 
    CGATGGAAGT AACCTAATTG CTCTGCTCTC TCACACGTAA CACGTGATAT 
    TTCTGGACTA AAAATGATTT TACAATCAAA ACAAAAATGG CCAATCCAAA 
    TTTTCATATA AAAATTATAT TTTAGAAAAG AAATTTGATT TTTAATTACA 
    AAACACTTTT GAATGTACGC AGGGACGGTC TACACAAGGC TAGTCGAACC 
    AGCTTACGTG GCGGTGAGAA ACG

AT3G54400.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G07030.1); Has 3653 Blast hits to 3640 proteins in 325 species: Archae - 0; Bacteria - 0; Metazoa - 1052; Fungi - 421; Plants - 1910; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
Link
InterPro Scan - TAIR