1. Home
  2. Mutant Lines
  3. ET10978

ET10978

CSHL Arabidopsis genetrap mutant lines

Original: ET10978

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET10978

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30134432 [Map]; Strand: w
      • AT1G80100.1 - [+] show detail - histidine phosphotransfer protein 6
        Distance: 0; Region: exon3 (CDS)
      • AT1G80100.2 - [+] show detail - histidine phosphotransfer protein 6
        Distance: 0; Region: exon3 (CDS)
      • AT1G80110.1 - [+] show detail - phloem protein 2-B11
        Distance: -949; Region: promoter
    Flanking Genome Sequence: ET10978 - 3-prime edge
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTA 
    ATGATACTCA TGCTCTACTA CCTCCAGTCC TCTCAAGCAC CTGAAGCATC
    GTCACATTTA TGAAGCATTA TATTGACTTA AATATTGACC TATATATTAA
    TACAAAGAAG TATATATATA TAGCTCGTTT AATTTGTACC CTGGGCGGTT
    GCTAAGCTCG GAAGCAGAAC GAAAGGCAAC GCAGACGTTA CGAACCCTAC
    GAGCACCAAT GCTTGAACTG CTTCCCACCA GCTGATTCAG GTGTAATCCT
    ATTTTCTTGT AGTCCGAGAA TTCTCTATCC ATCCTGTTCA TTTATTTATT
    TGCATT

AT1G80100.1

Model type
Protein coding
Short Description
histidine phosphotransfer protein 6
Curator Summary
AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
Computational Description
histidine phosphotransfer protein 6 (HP6); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransfer factor 5 (TAIR:AT1G03430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80100.2

Model type
Protein coding
Short Description
histidine phosphotransfer protein 6
Curator Summary
AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
Computational Description
histidine phosphotransfer protein 6 (HP6); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransfer factor 5 (TAIR:AT1G03430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80110.1

Model type
Protein coding
Short Description
phloem protein 2-B11
Computational Description
phloem protein 2-B11 (PP2-B11); FUNCTIONS IN: carbohydrate binding; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B12 (TAIR:AT5G24560.1); Has 567 Blast hits to 552 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR