ET11

CSHL Arabidopsis genetrap mutant lines

Original: ET11

Phenotypes

Morphological phenotypes

Original description

  • no cotyledons
Anatomical entity
/structure development stage		 Phenotypes
cotyledon (PO:0020030)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1690185 [Map]; Strand: c
      • AT2G04810.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 219; Region: intergenic
      • AT2G04820.1 - [+] show detail - transposable element gene
        Distance: 3392; Region: intergenic
    Flanking Genome Sequence: ET11 - 3-prime edge 
    TCGTCGGCCC TCCGGGGCAG ATGTTTACTT GACCCTTCCA ATCTTTAGAG 
    AGGTGATGGA CCATTTATTG ATTATCACCT AGACGTTAAA ACGGCACCGG 
    AGTTGTCAGA GGGATGCATA AAAGTTGTAG GTTCTGATTT CAATTGAACA 
    ATAGAGAACG G

AT2G04810.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT2G04840.1); Has 335 Blast hits to 324 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04820.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.8e-214 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR