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ET11015

CSHL Arabidopsis genetrap mutant lines

Original: ET11015

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11015

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15865597 [Map]; Strand: c
      • AT3G44096.1 - [+] show detail - transposable element gene
        Distance: -2431; Region: intergenic
      • AT3G44100.1 - [+] show detail - MD-2-related lipid recognition domain-containing protein
        Distance: 442; Region: intergenic
    Flanking Genome Sequence: ET11015 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC AGAGCTTGTG TGCTCTGTTC 
    ATGGTCCTTA AGTAATATAG ACTTTTAGTA AGAAACTTAA CTAGAAGAGA 
    CAGACCGTGA AACCTAATGT GATCTTGAAT TTGAAAGTAA CACAGATGAC 
    AGACCTGGAA ACTCCTTTCC GCGAGTCATT AACTTCCTTT ATGGATGATG 
    CTGATCATAT GACTTGTATC TTGAGCTTGG ACGAAGATGC CGGAAGCTTC 
    AATAGATCAT CTGTGAGATG CATCTTTTTG GATTCATCCA TTTTAGACTT 
    TTACGTCTTC AAGAGACTCC ATATTCAATA AGAAATGACT AATGTGTTTC 
    AGCACTTTTA CACTTCCTTC AGCATCTTTA TTTGGTTATT CCGGGGATGA 
    TAAATGCTTT TGAAGGAAGA GATTATCATA GATTGCTTCT AACTTGATTA 
    GTATGTTATC TTGATGACTG CTACCTTGCG CAGTGGAAAC GTTAGACAGA 
    TTGGTTTGTG ACTCTTTGTT TCATGTAGAT CAACTCAAGT CTCTAAAGAG 
    CATTCTTTAT TTGGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15865511 [Map]; Strand: c
      • AT3G44096.1 - [+] show detail - transposable element gene
        Distance: -2345; Region: intergenic
      • AT3G44100.1 - [+] show detail - MD-2-related lipid recognition domain-containing protein
        Distance: 528; Region: intergenic
    Flanking Genome Sequence: ET11015 - 5-prime edge 
    CTTTCTCCTA ACCCTAACAC AATTCAATGG TCAGGCATGA TGATCTCTAC 
    GATAGCCTCT CCGATCCTTT CTATTTATAC TCTCTCATGG AACATAACAA 
    ACAAAGTCGG TTATGCAACT TCCTCTGTTT CACGCTCCTT GTCGTGTGCT 
    TCAAGTCAAC CACCTCTATT TCCTTGTCAC GTGAATCATA GAATCCTTCT 
    CAAAATGAGT TTCTGTAAGA ATTGATAGAG CTAAACAAAA TAGATTCAGA 
    TTTCACAAGT GGCAAGTTGT ACTAGTCTCA CAATCTGAGA CAAACCAATC 
    AACATTTTTT CTCTTTGTTC AAACCTCAAA CTCATACCGT ATTAGTTTGG 
    GCCTAACTCA CACCCAAAAG TTAGCTCAAG AGTGGAGGCT TATCACATAC 
    TTATATATTG CTCCACAAAC TATGAAAGTC TCAATGTAAA ACATATTATA 
    ACACATCCCC CTCACTCTCA GAATTGGACA TCTAAAGCGT GAAGTTTGTG 
    GGACTGGACA AACATGGGTG GTCCACAATC AAGACACGTA AAACCTAGAT 
    TAGTATGGGC CGAACTAACA CCCAAAAGCT AGCTCAAGAG TGGATGTTTA 
    CCACATACTT ATATATTGCT CACAAATTAT CAAAGTCTCG ATGTGGGACA 
    TATTCTAACA GTAACTTGGT TAACCATCTC ACAAAGCTCT TTCCCTAGCT 
    ATAAGTATGG TTCCACTTGT GAATTCTCAT CACAAAAAGA CATCATCCCT 
    CTGCTCATAG CGTAAATACT AATTTATTCA TATATAGCAT CCATTTCG

AT3G44096.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 4.8e-23 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G44100.1

Model type
Protein coding
Short Description
MD-2-related lipid recognition domain-containing protein
Computational Description
MD-2-related lipid recognition domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT3G11780.1); Has 286 Blast hits to 286 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 123; Plants - 124; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR