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ET11184

CSHL Arabidopsis genetrap mutant lines

Original: ET11184

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11184

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23444424 [Map]; Strand: w
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -418; Region: promoter
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -418; Region: promoter
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET11184 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGG 
    TCCCTGGAAC CCCCAAGGAG AAGAAGCGGG ACGCTCAAGT GGTTGGGTCT
    GGAGCTGGCA AAAGAGAAAA GAGATGGAGT AGGGGTAAGG TCCTGGGCAC
    GAGTGGATGC GGCGGCGTAT GCTAGCATGA GAGAGGAGTG AGTAGCGCAA
    GCAGCCATTG TTGGAGCTCT CTTTCTTTCT GGGTACAAAG AAGAAGAAGA
    AGAGTGCGAG TCTCCCTAAT CCACTCCACG CCCAAGGGGA TAACAACACC
    CCCTATTCTT TCTGAGCTAT TATTCTCTGC GTGGCGGGCA CCTTAGCTAC
    CGTGTTCCTA GTGACACGTG TCTTCTTATG GACCATTAGA TCTTTTAACA
    ACCCACACGC GTATCCTCCT GACCTCTTCT CCTTCTCCTT CTTCTTCTTC
    CTTCTCTTTT CTCAAAAATC AGATTTCGAG TTTCTTCTTT CCCGCCCGTA
    AGAGAAACCC TACTCTGACT CTCCACTCCA TTTGAGAGGT AAGTTCCGAT
    TCCTTTTCTC TCAGCTTCAA ATTTCCTGTG CTACTATT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23444476 [Map]; Strand: w
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -470; Region: promoter
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -470; Region: promoter
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET11184 - 5-prime edge
    TCCTACTTTC TCCCTGCAGG GACCGGAGAT GTGCTGCTAT TGACAGAGCT 
    TCCAACCACA AGTTTATTGT CTCCGCCGTG GCCGCTGAGG CTGACCTCGA
    CACGGAGGAG GACCTGGAGC AGACCGCCAC CGCCGTCCTT GATCCGCCCA
    AGCCTAAGAA AGGAAAAGCC GCTTTGGTTC TCAAGAGAGA TAGAGTATGT
    GCTTTACCTA CTTCAATTTC GCTTCCTTTA CTCGTGAATC ATCACTTTGT
    TTGCTTACCC ATTGACAGAC AAGGTCTAAG AGGTTTTTGG AAATCCAAAA
    GCTAAGGGAA ACCAAAAAGG AGTATGATGT CAACACTGCT ATCTCTTTGC
    TTAAACAAAC TGCCAACACA AGGTTTGTTG AGTCTGTTGA AGCCCATTTC
    CGTCTCAACA TCGATCCTAA GTACAATGAC CAGCAGCTGC GTGCAACGGT
    CTGCTTTGCC TTTTGCTGGA TATACACTCT ATCTTGTGCT GCTTCATTCC
    ACAACATTTT TTAATCTCAA TGCATTGTCT TTTTGTATAG GTGAGCCTGC
    CTAAGGGAAC TGGCCAGACT GTTATAGTCG CTGTTCTTGC ACAAGGTATA
    TTGCCCCACC AAATTCACTG CTAGGACTTA GGACAGAGAT TATGCTTTAC
    CATTTCAGTC ACCAAATTCA CTGTTAGGAC TTAGGACAGA GATAATGTTT
    ACGGTATCAG TCAGTCAGTC AGTACTTCTC TAGATGCAAC A

AT3G63480.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63480.2

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.1

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.2

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: chloroplast thylakoid membrane, ribosome, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 3-layer alpha/beta-sandwich (InterPro:IPR016095), Ribosomal protein L1, bacterial-type (InterPro:IPR005878); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR