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ET11275

CSHL Arabidopsis genetrap mutant lines

Original: ET11275

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11275

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15684025 [Map]; Strand: w
      • AT4G32500.1 - [+] show detail - K+ transporter 5
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: ET11275 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATG 
    CAGGGATGAA AGTAGGATGG GAAAATCCCG TACCCGACCG GATCGTATCG
    GTTTCGTTAG GGTTTGAGCC TCGTTTCAGC AACTGATGCA GCAGTAAATC
    GTCTCCTCTG GCTGCTGCAA AACATAAGCT GAGAGGTAAA TCCATTTTCC
    CCTGAGCCAA CATGAGTTCT GTCTCAGCCA AAATGCCTTT CATCACTGGA
    TCTGTTGAGT CTTTCAGATG CTGCATTAGA CCAAAACATA TCCCAGATGA
    GAAAAAATAG TCAAACCAGC TAAAATGTTG TAGTCACTAT GGATTTATAC
    GGAAATAGCT TCGGACTAAC CTGAAGAAGA TTATTCATGA TTATTGCCCC
    ATCACCAACG TTTGCCTGAA CAAGATTTAA GAATGCTGTA CGGTTCAGAC
    GAAGCAATTG ACTCAATCGT TTGGTTCGAA CTGTGAACAA CTGTGGCCTG
    TAACATAGAA CCCCAACTTC ACCAAAAACA TGGCCGGTCT GTGCTTCACC
    AACTACCTGC AATGAATACA CAACTCACAA CTTAAAAACC GTCACAAAAG
    AGAAATAAAA ATGCGGATTT TACCTGATCC ACTCCATTCA CACGCGCAAT
    GATGTCCTGT CATATAGTAG AAATGTCAAC TAATTTGAAA AAAGAACTAG
    GAGAAATAGA ATTGTTTAGC TGATGTAACC AAAGCAACTT ACAACAGCTC
    CTGTGACCAT TATGTAAAAG TCTGACGGTG CTTCATTCCG CAAAATCACA
    TCTTCTTTA

AT4G32500.1

Model type
Protein coding
Short Description
K+ transporter 5
Curator Summary
Encodes AKT5, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR