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ET11317

CSHL Arabidopsis genetrap mutant lines

Original: ET11317

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11317

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 252215 [Map]; Strand: c
      • AT4G00585.1 - [+] show detail - unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; ...
        Distance: 0; Region: exon2 (CDS)
      • AT4G00590.2 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -551; Region: promoter
      • AT4G00590.1 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -596; Region: promoter
    Flanking Genome Sequence: ET11317 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACCAGTCATA CTCCAGACTT TGGCTCTGAA ATCGCCTCCT TCTGCTCCAT 
    GTCCATGCTC ACCTCCTCCC ATTTTTCCTA GATCGGATCA ATTACTTCCA 
    CCAAAAACTG ATTCCTTTTC CTAATTCGAC AATGAAGATA GCCAGATCGA 
    TATCAGTGAC ATAGAATCAA AATGATGTCA ACCCTAGCCT CCCTAACATT 
    TAAAAATTAT TACAAAATTC AACAAGTGAG AATTGAAATA GAATGATTCC 
    GGCGAACCGG TGATCAGAAA TCGGCTTACC TTAGTGAAAT CAGAAGGATC 
    GCAAAGAAGA CGAAGAAGAT GAGACTTCTT CTACTTGTTC TAAAGAGTTA 
    AGAGGGTGAG CGAAACGAGT TATGGCATTT GTTTGTAAAT TTTCTGAATT 
    CTCAGGGTCT TTTATGTCTC GGACAGTAAT CTTTATTTTG GGCCTTCAAA 
    ATCCATTAGT TTCTCTTAAG GCCCATTTAA AACCATTTAA AGTTTATTTG 
    AGCCTTCTAA CTCTTTTTAC TTTCTCTTAA GCCCATTTAA AGTTTATGTT 
    GTCCAAAAAA CGACACGATG TTTGCATCAT TAATTCAACA ACGGTAGACG 
    TTTTTGTTTT TGCCTGAAGA CGATGATGGC TGGCGACGGA GCAGATCAAA 
    GTCGACGCTT TTTCGTGGCG GTTCACGTCG GGGCCGGATA TCATGCGGCG 
    GCTAACGAGA AAGCTCTTAG ATCTGTCATG AGACGCGCTT GCCTAGCTGC 
    GTCGACATTC TT

AT4G00585.1

Model type
Protein coding
Computational Description
unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.1

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 3104 Blast hits to 3030 proteins in 885 species: Archae - 117; Bacteria - 1482; Metazoa - 502; Fungi - 255; Plants - 169; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.2

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1).
Link
InterPro Scan - TAIR