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ET11489

CSHL Arabidopsis genetrap mutant lines

Original: ET11489

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11489

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40892 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -703; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET11489 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTGGAT 
    ACGGTTATTG CAGCCGCTAA AGACTTTTGT TAAGCTAAGC TCTCTTTTAC 
    ACATCATAAA GACATTTTCT ACGTTGTTCA AGTGTGCCTT TCCACATACA 
    TTACCCGGAC TCACTCACTA GTCACTATAA ATCAATATCG TTATGTTTTT 
    ATCTTACAAT AAGTGAATTT GAAGAATAAA ATAGAGCTTT GATGGATATT 
    ACTATTATAT ATGCGGTCTA GTAGATGCGT GTTGTTATTA TATTATTCCT 
    TGAAGATTAC TCTTTGCTTT TTTGTACCCC ATGGATAAAT GTGCCTTGGT 
    ATTAAGTTGC AAATTTGATT TAATTAATCC CTAAACATGT TACTAGTTAG 
    AGTTTGCACG TGACGATCTT GGGCAGCACC TAAACATGTA TTTGTGTGCG 
    TAATTTTGTA ATAAGTAAGT GCATCGAGTT TGATGAATCA GTATTTGAAT 
    GATAATTCGA TGAAAGTACA TTTGTTGCCA TAAGAACCCT AAAGTAAGAT 
    CCATAAGGAT GATGAAAGCT TCATTAATAA TAAAAGTAAA GTTAATCTAC 
    CTATAATAAC TAAATTAATC AAGAGTGAAA CTAAATCTGT AGAAAATTAA 
    ATGTAAGAGA TAGAGACTAG AGTGATTAAT TAAGCTTTGA CTATCCCTTA 
    AATCCTCATA ATCTCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40949 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -760; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET11489 - 5-prime edge 
    CCTACTTTAT CCCTGGTATC CACGGTGAGT CCAAATTTCC TGTAGAGCAC 
    ATTGGCTGGT GCACTTGCTC CAAAACTGTC TACGCCGATG GCTTTTCTTT 
    TGGAGCCAAC CATCTTCTCC CACCCAAAGG TCGACCCTGC TTCAATGCTC 
    ACTCTTGCTG AAACCTCTCA AGGTAACACA CTTTCTTTGT

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00114.1

Model type
Pseudogene
Curator Summary
pseudogene of transketolase
Link
InterPro Scan - TAIR