1. Home
  2. Mutant Lines
  3. ET11489

ET11489

CSHL Arabidopsis genetrap mutant lines

Original: ET11489

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11489

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40892 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -703; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET11489 - 3-prime edge
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTGGAT 
    ACGGTTATTG CAGCCGCTAA AGACTTTTGT TAAGCTAAGC TCTCTTTTAC
    ACATCATAAA GACATTTTCT ACGTTGTTCA AGTGTGCCTT TCCACATACA
    TTACCCGGAC TCACTCACTA GTCACTATAA ATCAATATCG TTATGTTTTT
    ATCTTACAAT AAGTGAATTT GAAGAATAAA ATAGAGCTTT GATGGATATT
    ACTATTATAT ATGCGGTCTA GTAGATGCGT GTTGTTATTA TATTATTCCT
    TGAAGATTAC TCTTTGCTTT TTTGTACCCC ATGGATAAAT GTGCCTTGGT
    ATTAAGTTGC AAATTTGATT TAATTAATCC CTAAACATGT TACTAGTTAG
    AGTTTGCACG TGACGATCTT GGGCAGCACC TAAACATGTA TTTGTGTGCG
    TAATTTTGTA ATAAGTAAGT GCATCGAGTT TGATGAATCA GTATTTGAAT
    GATAATTCGA TGAAAGTACA TTTGTTGCCA TAAGAACCCT AAAGTAAGAT
    CCATAAGGAT GATGAAAGCT TCATTAATAA TAAAAGTAAA GTTAATCTAC
    CTATAATAAC TAAATTAATC AAGAGTGAAA CTAAATCTGT AGAAAATTAA
    ATGTAAGAGA TAGAGACTAG AGTGATTAAT TAAGCTTTGA CTATCCCTTA
    AATCCTCATA ATCTCTTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40949 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -760; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET11489 - 5-prime edge
    CCTACTTTAT CCCTGGTATC CACGGTGAGT CCAAATTTCC TGTAGAGCAC 
    ATTGGCTGGT GCACTTGCTC CAAAACTGTC TACGCCGATG GCTTTTCTTT
    TGGAGCCAAC CATCTTCTCC CACCCAAAGG TCGACCCTGC TTCAATGCTC
    ACTCTTGCTG AAACCTCTCA AGGTAACACA CTTTCTTTGT

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00114.1

Model type
Pseudogene
Curator Summary
pseudogene of transketolase
Link
InterPro Scan - TAIR