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ET11637

CSHL Arabidopsis genetrap mutant lines

Original: ET11637

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11637

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19468628 [Map]; Strand: w
      • AT2G47430.1 - [+] show detail - Signal transduction histidine kinase
        Distance: -4541; Region: intergenic
      • AT2G47440.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -1091; Region: intergenic
    Flanking Genome Sequence: ET11637 - 5-prime edge
    TTCCTCCTAC TTTATCCCTG CTATTGAGTC ATCGATCCAA TGAACTTATT 
    CACTGCTTCA ATTTTATGAA ATATCATTAT TTTAACGTAA ACATCATTAC
    TAGTGTTTTT ATCATCAAAT TACCGATTTA GTGTAAGTAA ATCGAATCAG
    TTTTTAAATA CTGTTGGACA CATATATACA TAGACATGCC AATTACTCAA
    GTATCATGTT GGTTTGCATA TACTCTAGTT TTAATCAGGG TTTATATTAT
    TTCAATTTAA GTAAACGCAT GCTAAATGAT AGATCATGAA ATAGAATTAG
    GGTATCCATT GTTTAATGAA ATGAATCGTT GAACTGGTAT AACATGCAAA
    AAGATAATGT ATCCACTATG TAAGCATTAT AAGGTGCCGC TATAACAAAA
    ATATCCACAT GGTCAAGACT GAAACGTCGC ATTATCAAAC AATATTACAT
    GCTCAATTGT TAAATTTTCT AGCCAAATTA ATAATATCGT CATGGAGGAA
    AAAAAATAGA GTTGAATAAT TGGCAATGAT CATAATGGAT ATGGGTTTCT
    CAAAAACGCA ATCATATATC GTGCGACAAG GTTACAGTAA TATAGATATC
    ATGCTTATTC CAAAACGACG ACTAAAACGT AAAAGAATAC AGAACTAGTA
    AACGAG

AT2G47430.1

Model type
Protein coding
Short Description
Signal transduction histidine kinase
Curator Summary
Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte.
Computational Description
CYTOKININ-INDEPENDENT 1 (CKI1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 1 (TAIR:AT2G17820.1); Has 89821 Blast hits to 76986 proteins in 2917 species: Archae - 765; Bacteria - 78909; Metazoa - 25; Fungi - 2111; Plants - 1771; Viruses - 21; Other Eukaryotes - 6219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47440.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G62570.1); Has 357 Blast hits to 345 proteins in 102 species: Archae - 0; Bacteria - 6; Metazoa - 79; Fungi - 59; Plants - 180; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link
InterPro Scan - TAIR