1. Home
  2. Mutant Lines
  3. ET11713

ET11713

CSHL Arabidopsis genetrap mutant lines

Original: ET11713

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET11713

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29496400 [Map]; Strand: c
      • AT1G78390.1 - [+] show detail - nine-cis-epoxycarotenoid dioxygenase 9
        Distance: -3525; Region: intergenic
      • AT1G78400.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 1881; Region: intergenic
    Flanking Genome Sequence: ET11713 - 3-prime edge 
    TATTTTACCG ACCGTTACTC ACCGATTGAT TGGGAAAAGG ACTAAACTAA 
    ACAAATTAAA AACCCAATGA TTACATAACT AAAGTAACAA CATGTTGGTC 
    AAAGGGTCTC TTGTCCAATG ACTAATTAAT AGCTTACGAT ATAGTCATAT 
    ACTATGGATC CGAATGGTAA CTGCGTTTTG CTGTGCGGAA GAAATGCGGT 
    GCGGTTCAAA TAATAACGAA AATATATAGA TACATATATA TATGTAGAAA 
    TTTTAATATT GTTACTGCAC TGTTGCGGTG CGGTTTTGAG TGCGGTTTAT 
    GTCACCATTC ACAGTCTATA TATGTATTCA CACATATACA TGTTTTTAGC 
    ATATGATCAG CATGGAATTG AGATTTGATG AGACAAGCAA TAATTGGTCT 
    ATTACTCTAT AGTCTCTATG TAGAGATATT TGTTAGTAGT GTAAATTAAA 
    ACGTGAAAGC TTCCTCATGT GTGATGGCCC ATAGGTGATC ATGTCCATCA 
    TTTTGTGGTT GAAACTACTC ACATGGACTG ATGGACTCAC ATATATCCCC 
    AATATGGCAC GATATATTTT ATACATATAC ATTATTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26839944 [Map]; Strand: c
      • AT5G67265.1 - [+] show detail - unknown protein.
        Distance: -108; Region: promoter
    Flanking Genome Sequence: ET11713 - 5-prime edge 
    CTTTATCCCT GGGCTGGGCT ATTGATATTT TGAGAGAACA GAAAGACAAA 
    CGCAAGAACC GGACGTTCGT ATACCCAAAA ATTACGATTT TCTGCTCTTT 
    TAGAAAATTT CTTTTATAAA TTTAATTTCT GGTACTTTTT CCTAAACTCC 
    AGTTAAAAAA TTCTATTACA ATATAGCTAT GAACCTAAAA TCCACGAAGG 
    TATGATGAAT TCATCTTCTT TTACTTCTTT GGATTTTTCG TTTAGTAATA 
    TGATAAATCA TTCAATTGTA ATAAAATTTG AAACGGATTA ATTAAATTGT 
    AATATTTGTA ATTTGATTTT ACTTGTAAGG AAATGGAGAC TGAAAAAAGA 
    AAAGAGGATG GATCATCATC AAAAGTGGTG GTGGAAACAA CGGAGCAACG 
    TTCCTCGGCG GGGAAAGGCA CAGAGCAAAG AAAT

AT1G78390.1

Model type
Protein coding
Short Description
nine-cis-epoxycarotenoid dioxygenase 9
Curator Summary
Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
Computational Description
nine-cis-epoxycarotenoid dioxygenase 9 (NCED9); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 3 (TAIR:AT3G14440.1); Has 2892 Blast hits to 2853 proteins in 497 species: Archae - 16; Bacteria - 810; Metazoa - 240; Fungi - 201; Plants - 889; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78400.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G33160.1); Has 3713 Blast hits to 3693 proteins in 464 species: Archae - 4; Bacteria - 847; Metazoa - 14; Fungi - 1259; Plants - 1481; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67265.1

Model type
Protein coding
Computational Description
unknown protein.
Link
InterPro Scan - TAIR