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ET12023

CSHL Arabidopsis genetrap mutant lines

Original: ET12023

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12023

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8100785 [Map]; Strand: w
      • AT3G22880.1 - [+] show detail - DNA repair (Rad51) family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12023 - 5-prime edge
    AATCACTTAC TTAAGAGAAG CCATCATTTT CTCGCTCTAA GACTCTCTAA 
    GCTTGGAAGA GTGAGAGAGA TAGAATTTTG AAATTCGAAA TTTGAAAATC
    TTTGCTCGAT TTGCTTCGAG GGTTCAAGGT TTTTAATGGC GGGTTACGGA
    ATTGAAAGCG TGATTCTAAT TCCGTTGATT TGAATTTGGG TTCCGCAACT
    GAATTTGTTT TCGTTTGTGT GCTCTTGTTT GTTATACATG ACTTTGTTTG
    ATGGCTGCGA TAATGCCACG TCATAGTTAT CATCCGTCTA TCGACGGTCA
    ATAGAAGGAA TCTAGGTGAA AAAAATTAGC CACTTGCACT TCATAACGGC
    GCACATTAGA CATTTGACTC ACATTTTATC GATAAAATCA AATGCATATA
    GGCCCATAAG CCCAGTATAC TAATTATTCG GATGCATATA GGACCATAGG
    CCCATTTTAC TGAAATTACA GAAAAATAAA AATAATATAG ATGCATATAG
    GCCCAATCTA ATATTTGTTT GCGGATCCAC TAATCAAATT AATTTTAAAA
    AGTTGGGGAG TTTAACCAAC GATCTCTATT ATTACTAGAA ACTATACATT
    TCTACCAACT ATCATATTAT TCCTTT

AT3G22880.1

Model type
Protein coding
Short Description
DNA repair (Rad51) family protein
Curator Summary
Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.
Computational Description
DISRUPTION OF MEIOTIC CONTROL 1 (DMC1); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, meiosis, chiasma assembly, reciprocal meiotic recombination, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), ATPase, AAA+ type, core (InterPro:IPR003593), Meiotic recombinase Dmc1 (InterPro:IPR011940), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: RAS associated with diabetes protein 51 (TAIR:AT5G20850.1); Has 11998 Blast hits to 11924 proteins in 3797 species: Archae - 689; Bacteria - 8026; Metazoa - 742; Fungi - 447; Plants - 503; Viruses - 22; Other Eukaryotes - 1569 (source: NCBI BLink).
Link
InterPro Scan - TAIR