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ET12056

CSHL Arabidopsis genetrap mutant lines

Original: ET12056

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12056

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10603654 [Map]; Strand: c
      • AT3G28345.1 - [+] show detail - ABC transporter family protein
        Distance: -4879; Region: intergenic
      • AT3G28350.1 - [+] show detail - similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar...
        Distance: -4705; Region: intergenic
    Flanking Genome Sequence: ET12056 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TATATAAACA TCGATTTAAA CTATACGATT TGGTATAAAT GTCGATGAAC 
    TAACCGCTAG GTTTTATAGC CGATTTGACC CCACGACCGG GTATAAAAGT 
    TGATGACTCG ACAGCCGGGT ATAAAACCGC TATTATAAAG GCATGTCCAA 
    TTTCACATGT GTTACCACAT ATGAGCTTGC CGGAAGTATT GGAAAACATG 
    TGACACAATA TATATCATAG ATATGGGATA AAAGAATAAA TGATCAAACA 
    TATGAAGTTT TAATATATAT CCACATTCTT TACAATCATA GACTTTATCT 
    TCAATCCACT GGCATAATCC CATCAAGATT GATTTATATA AATTTGATTT 
    ATCTTTTCTC GAAATCCCAG CGAGATCCCA AAACATGGAG GCCGGCCGAG 
    AAGAAAACAC AATATGTTTC ATGAGTTATA TAGTTAATTT GGAGAGGTAT 
    AAATGAAAAG GTCTTTGAGG ATGTAGTTAG GGAACCACCC GATATAATTA 
    GTCATGTGTT AAGTGACAAT AATTTTTGGA A

AT3G28345.1

Model type
Protein coding
Short Description
ABC transporter family protein
Computational Description
ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28350.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT3G28350; unknown protein
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar to hypothetical protein OsI_021564 [Oryza sativa (indica cultivar-group)] (GB:EAZ00332.1)
Link
InterPro Scan - TAIR