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ET12061

CSHL Arabidopsis genetrap mutant lines

Original: ET12061

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12061

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10548576 [Map]; Strand: w
      • AT3G28290.1 - [+] show detail - Protein of unknown function (DUF677)
        Distance: 0; Region: exon2 (CDS)
    2. Chromosome: 3; Position: 10566809 [Map]; Strand: w
      • AT3G28300.1 - [+] show detail - Protein of unknown function (DUF677)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET12061 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCTGTA CATAGTAGAA 
    CCATCGATCC GACGGCAACA GCAACAAACG CACCGATGAA AAGCACATTC 
    GAAATTATAC TCCATTTCTT TAGACTACTT ATTTCCATCC CAATATTTTT 
    AAGTTCCTCA CCAAGCTTTT CCTTAGTCTC CTTCACTCTT TCCAGAAGGG 
    ATTCTTGCTC CTTGTGCATC AACTTGAACA GAGTCGTGAA CTTATCGCCA 
    TCAAAAGGAT TTCCCATGGC TTCAAACTTC TTCAGCTCCC TCAAGGTATT 
    TTCATACCTC TTCGTTTTTT TGCCAACATC ATTTTCTTTG TCTTTTTCAA 
    ACTGTGCCAC GGCCGCTACA ATGTAACGTT CGCCCCTTTT T

AT3G28290.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF677)
Curator Summary
Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.
Computational Description
AT14A; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G28300.1); Has 228 Blast hits to 220 proteins in 54 species: Archae - 6; Bacteria - 60; Metazoa - 5; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28300.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF677)
Curator Summary
Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.
Computational Description
AT14A; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G28290.1); Has 228 Blast hits to 220 proteins in 54 species: Archae - 6; Bacteria - 60; Metazoa - 5; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR