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ET12064

CSHL Arabidopsis genetrap mutant lines

Original: ET12064

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12064

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10603673 [Map]; Strand: c
      • AT3G28345.1 - [+] show detail - ABC transporter family protein
        Distance: -4898; Region: intergenic
      • AT3G28350.1 - [+] show detail - similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar...
        Distance: -4686; Region: intergenic
    Flanking Genome Sequence: ET12064 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTATATAAAC ATCGATTTAA 
    ACTATACGAT TTGGTATAAA TGTCGATGAA CTAACCGCTA GGTTTTATAG 
    CCGATTTGAC CCCACGACCG GGTATAAAAG TTGATGACTC GACAGCCGGG 
    TATAAAACCG CTATTATAAA GGCATGTCCA ATTTCACATG TGTTACCACA 
    TATGAGCTTG CCGGAAGTAT TGGAAAACAT GTGACACAAT ATATATCATA 
    GATATGGGAT AAAAGAATAA ATGATCAAAC ATATGAAGTT TTAATATATA 
    TCCACATTCT TTACAATCAT AGACTTTATC TTCAATCCAC TGGCATAATC 
    CCATCAAGAT TGATTTATAT AAATTTGATT TATCTTTTCT CGAAATCCCA 
    GCGAGATCCC AAAACATGGA GGCCGGCCGA GAAGAAAACA CAATATGTTT 
    CATGAGTTAT ATAGTTAATT TGGAGAGGTA TAAATGAAAA GGTCTTTGAG 
    GATGTAGTTA GGGAACCACC CGATATAATT AGTCATGTGT TAAGTGACAA 
    TAATTTTTGG AAAAGCCCAA ATTATCCACA TACGTATATT TAATGAGATC 
    TAGTTACTTA GTAAGAAGTC CTTGAAAGCT TTTTGGCCAA GTAGATGGCT 
    TTTGGAAGGA AACAATAGTT CCCACCCCAT GATTAGGATG TGTTTGTTTT 
    CGGCTGGATG ATAAGACAAT GACTTTGGGA GTCTAATATG AAACAAAGAA 
    TCTCTCGCCT CTTCTCTCAG AACTAAAGTT CTTGTTTTAG TTGTTTCAAA 
    TTTCTCGTGA GATATATAGA TTGTCAAATT TTTG

AT3G28345.1

Model type
Protein coding
Short Description
ABC transporter family protein
Computational Description
ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28350.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT3G28350; unknown protein
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar to hypothetical protein OsI_021564 [Oryza sativa (indica cultivar-group)] (GB:EAZ00332.1)
Link
InterPro Scan - TAIR