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ET12167

CSHL Arabidopsis genetrap mutant lines

Original: ET12167

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12167

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 446576 [Map]; Strand: w
      • AT4G01023.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT4G01026.1 - [+] show detail - PYR1-like 7
        Distance: -476; Region: promoter
    Flanking Genome Sequence: ET12167 - 3-prime edge 
    TATCTGCCGC CATTGGCCCC GTTTCTCCCG CCTTTGTGGC CATAGCCGCC 
    ACTTTTTCCG CCATTGCTAT CAAACTCCTC CACCATTTTT ACAACC

AT4G01023.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 1605 Blast hits to 1547 proteins in 476 species: Archae - 6; Bacteria - 22; Metazoa - 955; Fungi - 207; Plants - 131; Viruses - 8; Other Eukaryotes - 276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01026.1

Model type
Protein coding
Short Description
PYR1-like 7
Curator Summary
Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2. PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of ABI1 and ABI2.
Computational Description
PYR1-like 7 (PYL7); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: regulatory component of ABA receptor 1 (TAIR:AT1G01360.1); Has 397 Blast hits to 397 proteins in 30 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 0; Plants - 390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR