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ET12230

CSHL Arabidopsis genetrap mutant lines

Original: ET12230

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12230

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152558 [Map]; Strand: w
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -646; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET12230 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATAAACAC 
    CTAACATATC CATTTGTCCC GCTCCAAACG CTTGTCCACA TAACGTTTCC 
    AACGCACTCG CCATTCCCAG CTGCAGTTTT TTTCTAGAAA GTTAGAGAAA 
    ACGCAAGAAA CAGAGGAGGA AAAAAGCAGA GTAGAGGAAG GTTATTTTAA 
    TCACCAAGAA ACCAAAGGAG AAATTAGAGA CGACGGAGAG AGCGATGGCG 
    ACGGCAGAAA GCTCAAGATC GCCGATATGG CCAACGAAGA TGCTTGTGAA 
    GGAGTTAACA CCGTAATTAC AAAGAACGTT GAAAGCTATA GGTGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152616 [Map]; Strand: w
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -704; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET12230 - 5-prime edge 
    CCTACTTTCT CCCTGGGTGT TTATATGCAG CGTTCTTGGC TTATCCTCCT 
    CGGAACTTCC GTCTGCTTGC TTCCTCTCTA CATCTACGCA ACTCCACTTT 
    TCATCTCACT CGACCAAGAA CCCGAAATCG CAGAGATCTC TGGCAAATTC 
    ACTACACAAA TCATCCCTCA AATGTTTGCG CTCGCTATCA ATTTCCCGAC 
    TCAGAAGTTT CTCCAGTCAC AGAGCAAAGT AGGGATCATG GCATGGATAG 
    GTTTCTTCGC TTTGACCCTT CACATTTTCA TCCTCTACCT CTTTATAAAC 
    GTTTTCAAGT GGGGGCTAAA CGGCGCAGCG GCTGCGTTTG ATGTCTCGGC 
    TTGGGGAATC GCGATCGCTC AGGTTGTTTA TGTTGTCGGG TGGTGTAAAG 
    ACGGTTGGAA AGGGCTGTCT TGGTTAGCGT TTCAAGACGT TTGGCCGTTT 
    TTGAAACTGT CGTTTGCGTC TGCGGTTATG CTTTGTCTAG AGATTTGGTA 
    CTTCATGACG ATCATTGTCT TAACTGGACA TCTTGAAGAC CCTGTCATAG 
    CCGTTGGATC TCTCTCAATC TGGTTAACCG TTAAAACCCT TCACAAACTC 
    AAAGATTTAC ATTCCTTTTT CTGATAACTG

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR