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ET12236

CSHL Arabidopsis genetrap mutant lines

Original: ET12236

Phenotypes

Morphological phenotypes

Original description

  • sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12236

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17748852 [Map]; Strand: w
      • AT3G48060.1 - [+] show detail - BAH domain ;TFIIS helical bundle-like domain
        Distance: -116; Region: promoter
    Flanking Genome Sequence: ET12236 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCGAA 
    ATGTACCCAT GAGTTTCCTA TCTATATTTA GAACGACATG CATAATCTTG 
    ATTGTGACAC TCAGTAATAT TTCTCTCTAA CCCGACCCGA CCCGACCCGC 
    CCCGCCCGAA CTCTCCCAAG TTACCTTTCC CCTTTTCGAC CGTTTCTCTC 
    TCTCTCTCTC TATTCTCTTC TTCGATTTAT TGGTGTTTTG TTCGCTTACG 
    CGATTTCTCG AAGAAAAAAT CTCGTATTCC TGGATCGAGA CAAGGCTGAT 
    TCGATTACTC GCTGTTGCTG TTGTTGATTT TGGATCTGTG TTTTGTTATC 
    TGCGGATCGG GAAATTGGAA AAACCCTAGA TATTTGAGCC ATTTCGTCGC 
    AAAATTAGGG ATTTTTTTTT CACCGCTGGG TTTTTGGATC TAAAGGTATC 
    GAATATTGTC TGGGGAAAAA AGGAATTTTG AGGATTTGTT TGATATTCGC 
    TGAGGAAATT GATGTTGTTC GAAGGAGAAG ATGATAGAAG GCTATGCATG 
    GGAGGGTTTG TGAGCGGAGG CACAAAAGTC GTCGTCGGCA CATGTTGATA 
    TCTTCCTCTC GTGTAATTGC GACT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11797445 [Map]; Strand: c
      • AT4G22330.1 - [+] show detail - Alkaline phytoceramidase (aPHC)
        Distance: -122; Region: promoter
    Flanking Genome Sequence: ET12236 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTTTCACCA AATTTTACCA 
    AATCCCATGT CGACGGAAGT GTGCGCCGCT CTTAGGTTTT TAATTTCAAT 
    TTTAATATTC TTTTACAATA TCCAAAATTC CGGCAGGTGA TAAGACGGGA 
    ATACCCCTCA ATTGGCGAAA TTCAGAAAAG GACCAAGAGA GAGAAGAAGA 
    CGAAACGATC GTCAGAGATA GAGAGAGAGA AAGGTCATCA CCCATTCTCA 
    CTCGCAGAAG ATTTGTTCTC ATCTGATTCC TCCGATCTGC CATGTCTCGG 
    CTTTTCTAAC GCTAAGAAGT TTCACAGACG CGGCGAAGGA GAGGGAGGAA 
    GGAGATAGAT CTCTTTTTCC GTCGCGATAA TAATAAAAAA TAAACGGTTT 
    GTTTTTCGTT CTCTTGCTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17748913 [Map]; Strand: w
      • AT3G48060.1 - [+] show detail - BAH domain ;TFIIS helical bundle-like domain
        Distance: -177; Region: promoter
    Flanking Genome Sequence: ET12236 - 5-prime edge 
    CTTTCTCCCT GATTTCGAGT TATTCCAACC GTTAGGTGGA TTCTGAAAAC 
    GAACCATACT TTCTAACATT GCACATTACT ACTCATCATG AGTTGTTAGC 
    ATGTAATATC TATCTATATA AACATGTGTT GTGTTTTTAA CCCAAAACCG 
    GTTTCGCTAA TATAATCATA ATTCGGTACG AGGTTTTATA AGCTGAAATT 
    TGGACTCCCT TTGAAGTTTA TAACACTAGT CACTAGTGCA TAATTAAGCT 
    CACTGGACAT TGTTCGTTTA CTTCGATCGA TTAGCCAATG TAAACTGTTT 
    GGAAAATGCT TAGTTCAGAC TTCATACTAA TAATAAAGTA ATTTATTTGA 
    TCAGTTGTTG TCTAGGAAAA AGGTAACACA CATATGTGTA TGTATATGTT 
    TGCTTTTTGA ATTTAACCTC GACTTTTGCA TTGCAGCAAA CAAACATACT 
    TTTTTTAATA TTCCATTTAC TCAGAAATCT CTTTCTTTCA TCGAGAGTGT 
    GTGTGGCGTT ACCTTTTGTA CACAAGAACT GCAATTGATG TGAGATAACA 
    TATCAAAACT CTGTTTGTAT CTCTGATCCA TAAAAGTCTT TTTCCATTGA 
    TGCGTGTCTT GCTCTCTTTT TCAGGTAGAT TCCCGAATAT TATTCTGTGG 
    GTTTTTGTTT GTTTGGTGTG TTAAGTCAGA TTCTGCTCAA CTTCACCTTT 
    TCTTTTGAAC CCATCGTGTT GGTTTGTCTA TTTCGAGTAG GATTTATTCT 
    TTAATTTCAG TTTTTTTTCA TTCTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11797364 [Map]; Strand: c
      • AT4G22330.1 - [+] show detail - Alkaline phytoceramidase (aPHC)
        Distance: -203; Region: promoter
    Flanking Genome Sequence: ET12236 - 5-prime edge 
    TCCTGGGTGA TCAGTAATTT CTGTTTAAGG TCATCCTTCT TTGTTCCTGT 
    TTTTACTTAA TGTGGATTAA TAATATAATT AGAAAACTCG TGTAAATCCA 
    CTTTACTTTA ATGGTTTTTG GTACTTATTA GAGTCAGAGA CATAAAAGAT 
    CGCACGGATT TAGGGAATGA ACTTTACCAA CCAATCATTT ACTATGACTA 
    GATGTATTTA ACATGAGACT TGTTTCTTAA C

AT3G48060.1

Model type
Protein coding
Short Description
BAH domain ;TFIIS helical bundle-like domain
Computational Description
BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48050.2); Has 5615 Blast hits to 3296 proteins in 434 species: Archae - 6; Bacteria - 1034; Metazoa - 2145; Fungi - 615; Plants - 463; Viruses - 15; Other Eukaryotes - 1337 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22330.1

Model type
Protein coding
Short Description
Alkaline phytoceramidase (aPHC)
Curator Summary
Encodes AtCES1 for Acyl-CoA independent ceramide synthase.
Computational Description
ATCES1; FUNCTIONS IN: catalytic activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: ceramide metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ceramidase (InterPro:IPR008901); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR