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ET12320

CSHL Arabidopsis genetrap mutant lines

Original: ET12320

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12320

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8830055 [Map]; Strand: c
      • AT5G25400.1 - [+] show detail - Nucleotide-sugar transporter family protein
        Distance: 5723; Region: intergenic
      • AT5G25410.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -1615; Region: intergenic
    Flanking Genome Sequence: ET12320 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CGTCTCGTAT TCATACCAAA 
    GATGGAGCTA GTCAGTCTAG AACACCTCTC GTCCTCTACT TTCTTTTTTT 
    TGACAATCAA CCTCTTGTCC TCTACTTCCT TTTCTTATTC TGCCTCTTAT 
    CCTCATCCCA AATTGCTGCT TAAATCACCA TCGTGAACAT ATGAATCATA 
    TGAATTTCTC AGACAAGCAA AAGCACCCAA AGAAACCCAA TGAAAACTAT 
    ATAAATATAC TTTGGAAAGC TGATTTATAA AGATACACTA ATGTAGGTAA 
    AGAACACAAC CATTTAATTT GTTATTCAAA TCAACAATAT GGTTTATTCA 
    ACACAAATAA TCGAACATGT AAACTAATAA CGGTTTCCAA CATTCAAATA 
    TCATTAGCTA GGTGAATAGC AATGATTTCC AACAAAAGAA GTGTAAAATG 
    CCAGACAAAG CAGCACCAAA GCTAACTATT GTTCATGTTT AAAAACAAAA 
    AATCTTTTTA GCTTATGTAA AAAAAAGAAA AAGCTAACTA TTTTTCAAAT 
    GCTTTAACAT TTTCTCCACT ATGTATGATT TATTCGTTAC AAGTTTTTCA 
    GCAGCTATTT CTGAATATAT CATCCATG

AT5G25400.1

Model type
Protein coding
Short Description
Nucleotide-sugar transporter family protein
Computational Description
Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G11230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25410.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G60380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR