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ET12450

CSHL Arabidopsis genetrap mutant lines

Original: ET12450

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12450

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29794977 [Map]; Strand: w
      • AT1G79200.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: ET12450 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GTCCGTTTTC ATCCCTATAT 
    AGGTAAGACA AAGCTAAATT GATGCTCCGT TAATGGCATA CAAGAACAAG 
    AAAACTCCAG CTCACATGGG TATAACTATA AACACACCAC TCTCTAGATG 
    AAGAAGCAAA CACATCAAAT TTATCATACG ACAAACTTAA CTTGACTCAA 
    CATATAATCA AGGTTCTAAA ACGGATGGAA CAATATTTAC TAACTCAAAA 
    CATGAGAAAC AGTATCTTAC ATGTACTGGA TTTGTGGTGC TTGTGAGATT 
    TCTTATCCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9445651 [Map]; Strand: c
      • AT3G25826.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET12450 - 5-prime edge 
    ATATTGCATC ATATCAGCAG CAAATAAAAG CAGAGGCAGT TCGATACTTC 
    AGAGACTTTT TAACGCTCAA ACCGCCAGAC TACGTAGATT GGTCGTGGAA 
    GGAACTGGAA ACTCTACTGG ATTATAGATG TGATGAGAAT GACAAGACAA 
    TGCTCACACA AAAAGTCACT GCAGAGGAGG TGCGGAAAGT TCTCTTCTCA 
    ATGCCTTCAA ATAAATCCCC AGGCCCTGAC GGATATACTT GTGAGTTCTT 
    TAAAGAGACA TGATCGATAG TAGGAAACAA TTTTGTGGTA GCCATCCAAT 
    CTTTTTTTAA GACAGGCTTC CTACCCAAAG GAGTAAACTC CACTATTTTG 
    GCCTTGATAC CCAAAAGAAA AGAAGCTGTG GTGATGAAGG ACTATAGACC 
    GATATCATGC TGCAATGTTC TCTATAAGGT GATATCGAAG ATTCTTGCAA 
    ACAGACTCAA ACATTCTTCC

AT1G79200.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G25826.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR