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ET12552

CSHL Arabidopsis genetrap mutant lines

Original: ET12552

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12552

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13162808 [Map]; Strand: c
      • AT4G25900.1 - [+] show detail - Galactose mutarotase-like superfamily protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET12552 - 5-prime edge 
    CTTTTGTTGG TCAAGGTAAT CCAAGTTGTG TAATCCTTCG ACATGGATTT 
    CACTGAATAC AACAACCAGC TGATTCAATG ACACTTACAC CAACACAACC 
    AAAAAAAAAG ATATCAACGT GAAGTTATGA CTCCTTGGAT TACCTGATAT 
    TGGAAACAGC GAAGTAGGGG TGAAGAGCAA ATGTGAAGTT AAATGGTTTT 
    GTATCAGTAT TCATCCTCAC TCGA

AT4G25900.1

Model type
Protein coding
Short Description
Galactose mutarotase-like superfamily protein
Computational Description
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR