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ET12554

CSHL Arabidopsis genetrap mutant lines

Original: ET12554

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12554

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11049679 [Map]; Strand: c
      • AT4G20530.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron3 (CDS)
    2. Chromosome: 4; Position: 11052938 [Map]; Strand: c
      • AT4G20540.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron3 (CDS)
    3. Chromosome: 4; Position: 11056197 [Map]; Strand: c
      • AT4G20550.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    4. Chromosome: 4; Position: 11059456 [Map]; Strand: c
      • AT4G20560.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    5. Chromosome: 4; Position: 11062715 [Map]; Strand: c
      • AT4G20570.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    6. Chromosome: 4; Position: 11065974 [Map]; Strand: c
      • AT4G20580.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    7. Chromosome: 4; Position: 11069233 [Map]; Strand: c
      • AT4G20590.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    8. Chromosome: 4; Position: 11072492 [Map]; Strand: c
      • AT4G20600.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    9. Chromosome: 4; Position: 11075751 [Map]; Strand: c
      • AT4G20610.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    10. Chromosome: 4; Position: 11079010 [Map]; Strand: c
      • AT4G20620.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    11. Chromosome: 4; Position: 11083856 [Map]; Strand: c
      • AT4G20630.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron3 (CDS)
    12. Chromosome: 4; Position: 11087115 [Map]; Strand: c
      • AT4G20640.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: 0; Region: intron2 (CDS)
    13. Chromosome: 4; Position: 11090374 [Map]; Strand: c
      • AT4G20650.1 - [+] show detail - receptor-like protein kinase-related
        Distance: 0; Region: intron3 (CDS)
    14. Chromosome: 4; Position: 11093627 [Map]; Strand: c
      • AT4G20670.1 - [+] show detail - Domain of unknown function (DUF26)
        Distance: 6; Region: intergenic
      • AT4G20680.1 - [+] show detail - Domain of unknown function (DUF26)
        Distance: -1400; Region: intergenic
    15. Chromosome: 4; Position: 11102018 [Map]; Strand: c
      • AT4G20710.1 - [+] show detail - similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20650.1); similar...
        Distance: 29; Region: intergenic
      • AT4G20715.1 - [+] show detail - transposable element gene
        Distance: 1359; Region: intergenic
    Flanking Genome Sequence: ET12554 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTTGAGCTCC ATATTAAATG 
    AAAGGGTTCT AGAGATAAAC AGTCTTATAA TATACACTGT GTTGCATTTT 
    AGTACGTGAA CTTGAGCGAA TAAATGTACT TTCCTCTTTG TTTTTTGTGA 
    ACTTGAGTTA TTAAGAGGAA ATCTTCAAGT AAAGAATTTA TCTAATAGTA 
    TATACATCCC ACATAGAATA CCAAATAGCT CAGCTCATAC AAACTCTCTC 
    ATAATGAGAG AAAAAAATCC TGAAATAAGG GTAAGAAAAA CTCTTATGCC 
    TCAAGGTTTT AGTAAATCTC ATAATTTTGG CCGAACCACA AAAAGAGACG 
    TGCGAAACAA AATAGTAGAA AATTGATTTC CCGAATCGAC AAACATGGAC 
    TAAACTATAT GTATGATACA TAACTGGTCG TACTTACAAT GATGATACTT 
    GGTTTCACGA AGACGAGGGA GCCTGGAGAT GAATGATGGT GATA

AT4G20530.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20540.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20550.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20560.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20570.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20580.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20590.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20600.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20610.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20620.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20630.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20640.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20650.1

Model type
Protein coding
Short Description
receptor-like protein kinase-related
Computational Description
receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20630.1); Has 1323 Blast hits to 1300 proteins in 55 species: Archae - 8; Bacteria - 25; Metazoa - 41; Fungi - 8; Plants - 1236; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20670.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF26)
Computational Description
Domain of unknown function (DUF26); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20620.1); Has 1465 Blast hits to 1431 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1465; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20680.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF26)
Computational Description
Domain of unknown function (DUF26); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT3G22000.1); Has 1375 Blast hits to 1344 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1375; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20710.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT4G20710; DUF-26 IntrePro domain family protein
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20650.1); similar to unknown protein [Arabidopsis lyrata] (GB:AAN46206.1); contains InterPro domain Protein of unknown function DUF26 (InterPro:IPR002902); contains InterPro domain Protein of unknown function DUF1204 (InterPro:IPR009596)
Link
InterPro Scan - TAIR

AT4G20715.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)
Link
InterPro Scan - TAIR