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ET12561

CSHL Arabidopsis genetrap mutant lines

Original: ET12561

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12561

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9436885 [Map]; Strand: w
      • AT1G27170.2 - [+] show detail - transmembrane receptors;ATP binding
        Distance: 0; Region: exon3 (CDS)
      • AT1G27170.1 - [+] show detail - transmembrane receptors;ATP binding
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET12561 - 3-prime edge 
    TTTTACTTAC CCAGGATAGG GCAAATAAGA AAGTCTTACC TCGTCGTTGC 
    GCAAACTCTG GACTCGTCTT ATTCTACTCT CTGAAAGATC AAGAACAGCA 
    AGTTGCCCAG CAAGAAAATC CAGAGGGAGA TTTTCTAACG GGCAACCTTT 
    CCACTGTATC CACTTGAGTT CAGATGGGAG AAGTTTAAGA TTTCCTTCCA 
    GTTCCACATT ATTAATCTGA AGAAGTCTCA ACTTCGTCAT TAGTACAAAA 
    GGTTCTACGG GAATGATGAT TTCAGAACTT TTTGGATTTT CCTCTGCGGG 
    ATTGTTGAGT AGACTCCTCG AAGCAATATC ATCTGCAGAC TTCTTTTTAA 
    AGTCACATAC GATTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 74837 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -683; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -683; Region: promoter
    Flanking Genome Sequence: ET12561 - 5-prime edge 
    ACTCACAAAG GCTTTGCGCG ACGAAACAGA GAAGAGCCGT AATTGTCACG 
    AGTTTTGGTT TACTGGTTTT GATATTTTCA AATTCAGAAA ACTTATTCCA 
    ATCTGTGTGG TGATTGTTGT TGCCTCCGTT TTTTAAGAGC CGGAATCGTC 
    AATCCCCGAG TTTTGGGCAG CCTTCGTTTA CTGGTTTTGA TGCTTTCAGT 
    TTCAGAGAAC TTGAAACCTT CTCCTTCATA GTCTCCATGG GTGGGATCAC 
    TATCCGCCAT TATTGCTGCA AAAAACTCGT CAAGAAAGTC CACTTCGCTG 
    TTGATACCCT TTATTTCATA GTCTCCATCT TCTGTGCCAC TTCGACCAAG 
    NGANGGGTGT ACAAGGCTTA ACTATATATC ATGTCAAGAG TCACTTACAG 
    GTATTCTCAA ACTGTGTGGC ATCTTGTCTC GTCTCTCTTT CTCTTACCCT 
    TGCTGATTTT TGCATTTGTG TATTTTGAGT CAGAAATATC GACTTGCAAA 
    GTATCTTCCA GATTCGTCTT CTGAAGGTAG TGTGGACATT GATTTTCTT

AT1G27170.1

Model type
Protein coding
Short Description
transmembrane receptors;ATP binding
Computational Description
transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27170.2

Model type
Protein coding
Short Description
transmembrane receptors;ATP binding
Computational Description
transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 88149 Blast hits to 36022 proteins in 1268 species: Archae - 44; Bacteria - 5525; Metazoa - 17765; Fungi - 1406; Plants - 58458; Viruses - 8; Other Eukaryotes - 4943 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR