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ET12576

CSHL Arabidopsis genetrap mutant lines

Original: ET12576

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12576

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7916197 [Map]; Strand: c
      • AT1G22420.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET12576 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATT CCTAGTTTCC GGGTCATATC 
    TCTCGGACAA CAATGGTGGA ACGTTCTCTG GTTGTAGATT ATTCTGAGGA 
    TTTGGCAAGT CTAACGGTAA ATTCTCCGGA ACTAGTGGTG GAACGTTCTC 
    TAGTTGTACA TAGTTCTCTA GTTGATTTGG TGTCCAATCT AGCGGCGAAG 
    TCACCGGTAG AACGTTATCT GGTTGTAGAT TGTTTTGAGG ATTTGGCCAG 
    TCTAACGAGG AAGTCACCAG AACTTGTGGT GGAGTGTTCT GAAAGTTAGG 
    AAAGTCTAGA CTCATTGACG GTGAAGTCGC CGGAACCAGT GGTGGAACGT 
    TCTCTGGTTG TAGATTGTTC TGAGGATTTG GCCAGTCTAA CGGTGAAGTC 
    GCTGAAACTA ACGGTAGAAC GTTCTCTGAT TGTATGGGGC AGTCTAGACT 
    CCATAACAGT GAAGCTGCCG AAACTTGTGG TGGAACATTC TCTGGTCGTA 
    TATTGTTGAG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1091968 [Map]; Strand: c
      • AT4G02482.1 - [+] show detail - chloroplast outer envelope GTP-binding protein, putative
        Distance: -34; Region: promoter
      • AT4G02485.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -713; Region: promoter
    Flanking Genome Sequence: ET12576 - 5-prime edge 
    GATATGAAGC CCTGCCATGG TAGAACCATT GTCCCCATTC TAATTTGGAA 
    GATTTATGAA TTGATGATTA AAAATACAAA ATTTACGATT TTATATAGAG 
    AATATTACAC TCGACACTTT ATTAAAATTA TTTCCGTGTT TAGGCACTTT 
    CAAAAGATTA GGCATTTTCT CTATGTTTTT TTACTAAAAT ACCCTCTTAA 
    CTAAAATATT CTCTTAACCC ACGTTTTCTC TCTTTCTCTC TCTCTTC

AT1G22420.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 5656 Blast hits to 3947 proteins in 438 species: Archae - 16; Bacteria - 438; Metazoa - 2628; Fungi - 766; Plants - 800; Viruses - 196; Other Eukaryotes - 812 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02482.1

Model type
Protein coding
Short Description
chloroplast outer envelope GTP-binding protein, putative
Computational Description
chloroplast outer envelope GTP-binding protein, putative; BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 159 (TAIR:AT4G02510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02485.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G31600.2); Has 487 Blast hits to 486 proteins in 165 species: Archae - 0; Bacteria - 93; Metazoa - 167; Fungi - 38; Plants - 88; Viruses - 3; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR