1. Home
  2. Mutant Lines
  3. ET12584

ET12584

CSHL Arabidopsis genetrap mutant lines

Original: ET12584

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12584

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24300045 [Map]; Strand: c
      • AT1G65420.1 - [+] show detail - Protein of unknown function (DUF565)
        Distance: -1475; Region: intergenic
      • AT1G65430.1 - [+] show detail - IBR domain-containing protein
        Distance: 853; Region: intergenic
    Flanking Genome Sequence: ET12584 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTCCTACCGA 
    TTCCACATAT ATAACCCTAA ACTGCACCCC ATGTTTATCC TTTTCGTAAA 
    ATACATCTTC AAGTGTTTAT ACATTTACTC CAAGTCTGGT TTCACTTTGT 
    GTTTTACTAT TTTGCTTTAT CTTGGTTTAC CTTTCCTAGT GCTTTTGGGT 
    GTGATGTTCT TACTAGGTCA TTTATAAATA GATGTCTCTT TCAGTGTTAA 
    GAGATCAGAC CTATTTTGAA TAGTAGAAAG AGAACATGTT TGCTTGGATA 
    TTCTTGCGAG ACTTTTGAAC AAATGTTTCC ATCGCATTGT TGTTTCCGAA 
    GAAACATCAT TTCTTAAAAG GAAATTGAAC TCGTTCAGAC ACTGACATGG 
    TTTCAGACAA TCTGTTTGGA TTCAACTTCT CTTCTACCCT CTACTCTTCT 
    TAATCTATTT TTTTTTATGG CATTTCACCA GTCACGCTCA CACATTTGTG 
    AAATGGTGCT CGAACTTGGA TTTACCTGAG TACAATAGTT ACAACACCAT 
    TGGCTTCAAT TGGAGCTGCT GGCTCTAGAA GTCGATCCCT TAGTCTTCCC 
    GCCTAAGCTC TTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24299973 [Map]; Strand: c
      • AT1G65420.1 - [+] show detail - Protein of unknown function (DUF565)
        Distance: -1403; Region: intergenic
      • AT1G65430.1 - [+] show detail - IBR domain-containing protein
        Distance: 925; Region: intergenic
    Flanking Genome Sequence: ET12584 - 5-prime edge 
    CTTTCTCCGC CGAAACCATG AGACTCGATC CTCAATCTCC ATTCTTGTGG 
    AAGAGAAAAC TTGAGTCGGA TTAGTTCTTT CACTGGAAGT CTTATGAAGA 
    TTTCCTCTAT GACGTCGTCT GGTAGTGATG ATGGAACAAT CACTTCCACC 
    TTTTTCTTCC ATTGATATGA AAAAATGGAT GAATGCATCT CTTTTTGCAT 
    AAGAATTTAG AGTATGGTAG TTTAAATCTA GTTAATCTCT TTGTTTTTAC 
    CTTTTAGTAA TGTTAATTTA AATTTTAGAC AAAAAAATTA AGATTTAAAA 
    ACAGAAGCTA GCTATAAAGA GATATGCATG ATTAGACCAG ATTCTAATAT 
    TAATTATTAT TTTTGGCAGG AAATCATACC TCTTACTAAA ATAAAGTTGG 
    AACACAGAAT TAGATAAGCA ATAATATACT TTAATCAGAT TATGAAAAAT 
    AAAACTTCTA AAGGTTTTGA TAGTTGTGAG ATTTTCAAAT AATATGTGGA 
    ATTACCAAAT TTATTATAAT TGATTAATCG TCCTCCAAAA TTTGTAAAAC 
    TTGAAATTCA GACAAAAAAA AGAGTAGAAG GAGTAAAATG TCTTTTTCAA 
    CAGAATGAAA ATCTAAAAAG CTTCAATGCC TTTTTGTCAT TGTTTCTCAA 
    TCATCACTCA TCTTCACCAA TCTCCATTGA TTCCTTCAAG CCAAGCTTCT 
    TGCATT

AT1G65420.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF565)
Curator Summary
Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq6.
Computational Description
NONPHOTOCHEMICAL QUENCHING 7 (NPQ7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF565) (TAIR:AT3G56830.1); Has 195 Blast hits to 195 proteins in 63 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65430.1

Model type
Protein coding
Short Description
IBR domain-containing protein
Computational Description
ARIADNE 8 (ARI8); FUNCTIONS IN: ubiquitin-protein ligase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 2973 Blast hits to 2950 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1311; Fungi - 559; Plants - 644; Viruses - 3; Other Eukaryotes - 456 (source: NCBI BLink).
Link
InterPro Scan - TAIR