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ET12615

CSHL Arabidopsis genetrap mutant lines

Original: ET12615

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12615

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14591753 [Map]; Strand: w
      • AT2G34650.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12615 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTC 
    TCAAACTTCT GAGAATCTTC TTCTTCTTCT CAATGCATAA ACCCTAAATC
    TTCATCTCTT TCGATCAGAA A
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 615791 [Map]; Strand: c
      • AT1G02800.1 - [+] show detail - cellulase 2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET12615 - 5-prime edge
    CTGCTCTCAA CGTAAATGAC ACTACTTTCT CTTGCTTTGT TGTTGCTTTT 
    ATGGAAAATG TGAAATGGGT CTGTTCTCGA TTAACATGAA TGCTAGCAAT
    CTAGGTTAAA ACTTAACATA TATCATCAAA AAAGGTTCAA ACTTTATGGG
    GTTGTTGCAT AAAACAGAGG AATCGAAACC CTAAATTTGT TTATTATGGT
    TTTTAGGTTA AATTTCTCTA TCAAAATCAT AAAAAAATTC AAACTTTATG
    GGACTGTTGC TTAGAACAGA GGAATTGAAA CCCTAATTTT GTTATTATGC
    TTTTTAGGTT AAAACAGAGA AACTAAGTTA CATATTTTCT TGGAAAGCCT
    AATTTGTGTG AATTGGTTTA ATTTTGTAGG TGGATTTGGT GGGAGGATAC
    TACGATGCAG GGGACAATAT GAAGTTTGGA TTCCCAATGG CATTCACAAC
    CACAATGCTC TCATGGAGTT TAATTGAGTT TGGTGGTCTC ATGAAATCTG
    AGTTACCAAA CGCAAAAGAC GCTATTCGTT GGGCTACTGA CTTTCTCCTC
    AAAGCCACTT CACATCCTGA TACCATTTAT GTTCAGGTTT TTTACTTTGC
    TCTAAATTCT CTCCTCCAAA AAAAAA

AT1G02800.1

Model type
Protein coding
Short Description
cellulase 2
Curator Summary
Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.
Computational Description
cellulase 2 (CEL2); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to nematode, pattern specification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1); Has 1817 Blast hits to 1800 proteins in 268 species: Archae - 2; Bacteria - 651; Metazoa - 181; Fungi - 17; Plants - 925; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34650.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.
Computational Description
PINOID (PID); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase (TAIR:AT5G55910.1); Has 93882 Blast hits to 91860 proteins in 2892 species: Archae - 58; Bacteria - 12658; Metazoa - 35611; Fungi - 11097; Plants - 17324; Viruses - 331; Other Eukaryotes - 16803 (source: NCBI BLink).
Link
InterPro Scan - TAIR