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ET12618

CSHL Arabidopsis genetrap mutant lines

Original: ET12618

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12618

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21717036 [Map]; Strand: c
      • AT1G58440.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G58450.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -978; Region: promoter
    Flanking Genome Sequence: ET12618 - 5-prime edge 
    CCTCCGACGT CGGATCTGTT AATATTACCG GAGATACCGT TGCTGATGTC 
    ATTGTTGTTG GAGCTGGTGT TGCTGGTTCT GCTCTTGCTT ATACTCTTGG 
    AAAGGTCGGT TTCTCGTCTC TTTGATTTGA TTGCTTATGG ATTCGAATTA 
    GGTGGTGATA GTTTTGTTGA TTTGATTCTG GATTTGAAAA TTCTAGAGAA 
    TGAGTGATGA AGCATATGTA GTACTAATTG TTTCTTTTTG TCAAAGCGAA 
    TTGTTTCCAT TCTCTGATTG CGTATTGAAT CCAGCTCTGG TTTCGTGGAA 
    TTGATTGAAT ATGCATAGTT CAAATCCAGA TTTTCTGTAA ACAATTTTTG 
    TTTCACACAA TG

AT1G58440.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Curator Summary
Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.
Computational Description
XF1; FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: response to water deprivation, sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698); BEST Arabidopsis thaliana protein match is: squalene epoxidase 2 (TAIR:AT2G22830.1); Has 1994 Blast hits to 1990 proteins in 731 species: Archae - 43; Bacteria - 1249; Metazoa - 112; Fungi - 225; Plants - 178; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G58450.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, binding; INVOLVED IN: protein folding; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: rotamase FKBP 1 (TAIR:AT3G25230.1); Has 3730 Blast hits to 3559 proteins in 279 species: Archae - 0; Bacteria - 41; Metazoa - 2106; Fungi - 376; Plants - 567; Viruses - 0; Other Eukaryotes - 640 (source: NCBI BLink).
Link
InterPro Scan - TAIR