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ET12630

CSHL Arabidopsis genetrap mutant lines

Original: ET12630

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12630

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12630 - 3-prime edge 
    CCCCCCCCCC CCCCCCCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24259690 [Map]; Strand: c
      • AT1G65310.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 17
        Distance: 1217; Region: intergenic
      • AT1G65320.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: 198; Region: intergenic
    Flanking Genome Sequence: ET12630 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACATGATG 
    CGCAATAGGT GCCTCGGTGC AGAAAGTAAG AACTTGTCAC GGCATTTAGA 
    TCAAAGGGTC TTGTGTTTCA TATCTTCTTA GTCAACTCGA ATATTCTTTA 
    GTTCTGTTGG TGTCTCCAAA CTACGAGATA TTTGAGTTGT AACAAGGGTG 
    TAACGCAGCT TTTGTGTGTG CTCACCTTGC AATGAATAAC ACCTTTGACT 
    GTCTTAGAAA AAATAATTTA ATTTTGCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24259632 [Map]; Strand: c
      • AT1G65310.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 17
        Distance: 1159; Region: intergenic
      • AT1G65320.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: 256; Region: intergenic
    Flanking Genome Sequence: ET12630 - 5-prime edge 
    TCCTCTTTAT CCCTGGCATC ATGCACGTGA ACTGAACGTA ACATGATAAA 
    ATTCAGAGTA TTTATATATG TTCCGTTCAG TTGCATGGGA CTGGAGTTAT 
    AAAATCAGAA CACGTGGAAA CACAAAGGAA TTCTCTAGAT CGCCATTATT 
    AGTTAGAAAG ATTGCTGGAG CGTATCAGTA GGTGTAATAG TTTGAGCACT 
    TAAGAGTGGG TCATTGGTCA TCGAAGCATG TGGCAGCCAT TGTGTTAGCT 
    AGACTCTGTT AAACATTAAA TAGATGAAAT GTGTGGTAGA ATTTTTTTTT 
    TTTTTTTGGA GAAAAAAGGG AAGTTTTTTT TCCCCCCCTT TTCCCCCAAA 
    AAGGTTTAAA AAATAAAGGG GTTCCCCCCC CCAACTTTTT TCCCCCCCAC 
    GGGGAAAATT TTTAAAAAAG GGGGGGGGAG CGCGGAAAAT TTAAAGGGGT 
    TTTTTTTGGG GCAAA

AT1G65310.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 17
Curator Summary
Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.
Computational Description
xyloglucan endotransglucosylase/hydrolase 17 (XTH17); CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 18 (TAIR:AT4G30280.1); Has 2226 Blast hits to 2204 proteins in 309 species: Archae - 0; Bacteria - 291; Metazoa - 0; Fungi - 455; Plants - 1386; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65320.1

Model type
Protein coding
Short Description
Cystathionine beta-synthase (CBS) family protein
Computational Description
Cystathionine beta-synthase (CBS) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT5G53750.1); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR