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ET12637

CSHL Arabidopsis genetrap mutant lines

Original: ET12637

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12637

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1909570 [Map]; Strand: w
      • AT3G06300.1 - [+] show detail - P4H isoform 2
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: ET12637 - 3-prime edge
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTCA 
    CAGCTCTCGT TTACGTCAGT ACAGTTACCA TCATGTGTCA ATATCTTATC
    GAATGAGTCC ACGTGGATCC ACTTAGTAGC CGACCATTTC TCTCCTTCGA
    TCACTGGACA ACCTCCGTGA AGGCTAAAGG GGTCTGGGAT TGCGTCTTGT
    TGGAGGTTGA AGAACAACAG AGCATTCCCT TTCTTCGGTT TCACTAATAA
    CATTACCAAC CAATATCAAA CACAAACATT CTTAGAGATA ACATGGAAAG
    AACAAGTCAT GATTCCTTTT ATATATAGCT CACCAGCGAT TCCTTTCTTT
    GCACAATCAG AAAGATCGTC TTTATTCTCA GAAAGCGAGC GGCGAGAGAA
    TTCCTGCGCA GAAATATTCA TCATACAGAA AAAGAGTAAA GACCTATTTG
    TCCACGTATA TAGAGAACCA ATACAAGATT AGCAATTGTG GAAATGTAAG
    CGGAAATTGG TGGTATTGTC TGAAAAACAA CAAACCTGTG CATCGGGGAA
    AACAGTTTCT CCACCCTTTG TGACATTGGA CAGATACAAG AGAACCGTTG
    CTATGCGGTG TCCACCACGG GCAATGTTGA CTTT

AT3G06300.1

Model type
Protein coding
Short Description
P4H isoform 2
Curator Summary
Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.
Computational Description
P4H isoform 2 (AT-P4H-2); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, procollagen-proline 4-dioxygenase activity; INVOLVED IN: peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G18900.1); Has 2500 Blast hits to 2478 proteins in 341 species: Archae - 0; Bacteria - 386; Metazoa - 1038; Fungi - 78; Plants - 408; Viruses - 17; Other Eukaryotes - 573 (source: NCBI BLink).
Link
InterPro Scan - TAIR