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ET12642

CSHL Arabidopsis genetrap mutant lines

Original: ET12642

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12642

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19447021 [Map]; Strand: w
      • AT2G47390.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -656; Region: promoter
      • AT2G47400.1 - [+] show detail - CP12 domain-containing protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET12642 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCCTT 
    AACCACAACC ATCCGCTTCA TCTCACTCGA CTACCACGGG TAATTCAACC 
    GGACCGGACC TAATACACGA GCCACAGGTC GAACGACCAC TCGTGGAGTC 
    GCGACGTTGA GGCCAGCTGC AGCTATGGTT GTCATCGTCG GAGGATTTTG 
    ATGGAGGAGA AAAGTTTTTT GATGTGAAGA GATGAAGAAG ATAAAATATA 
    CTCGTTCACG TTATTAAACT CTGTGAACAC AATCCTCTTA TCTTCTAAGA 
    ACCAAGCATA TTTTGCCACG TGTACTTAGA TTTTTTCACA AAAAGTAGTA 
    TTCTACCAAT TTGAGAAACA TAAGTTTTTC CCCGGAATAT TTATTTTATC 
    AGCCGTTGAA CATTTTTTCT TGAAAATTAT AGAAGCTTTT TTTTTAATTT 
    TTGACTGAAA TAATAAAAAT TTGTTATCAT TTTCTCTTCT GAAATTTTCA 
    TAGACATAAA CTTCTCATGA AAAGTAGCAT AATAAATTAA TAATTACTAT 
    ATTTTTGAGT ATTTCATTTT GTTGAGAAAA AGGGGGAGGA CGACTGACTT 
    ATAATGGGCC ATATTCCAGG AAATAAGCGC TAGTTGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19447085 [Map]; Strand: w
      • AT2G47390.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -720; Region: promoter
      • AT2G47400.1 - [+] show detail - CP12 domain-containing protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET12642 - 5-prime edge 
    CCTACTTTCT CCAGCTACAT CGGAAGGAGA GATATCGGAG AAGGTGGAGA 
    AGAGTATACA AGAAGCTAAG GAGACATGCG CTGATGATCC GGTGAGCGGG 
    GAGTGTGTAG CGGCTTGGGA CGAGGTGGAG GAGCTGAGTG CGGCGGCGAG 
    TCATGCTAGG GACAAGAAGA AAGCTGGTGG CTCCGATCCT TTGGAAGAGT 
    ATTGCAATGA TAATCCTGAG ACTGATGAGT GTCGTACTTA TGATAATTAA 
    AAAATATGTT TTTGATGTTC GAATTATGAA ACTTTAGGTA TGGATCAATG 
    TTTGTTCTTC TTGTCACTCG ACGATATGTT TGTGTTTTTG GTTTGGTTGA 
    TGATTGTAAT GTGATAAATG AATATGAATA GTACAATACA CAACCTATGT 
    TTCATAATGT GTTTGGTTCG ATTACATTTG CAGTTTCGTG AAATTGATAA 
    TAAAAAACTC AATTAAGTTT AGATGAGGCT GAGATGATCT TAGGTCACTC 
    GCATACGTTC CT

AT2G47390.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106); BEST Arabidopsis thaliana protein match is: acylaminoacyl-peptidase-related (TAIR:AT4G14570.1); Has 4880 Blast hits to 4877 proteins in 846 species: Archae - 179; Bacteria - 3027; Metazoa - 477; Fungi - 49; Plants - 145; Viruses - 0; Other Eukaryotes - 1003 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47400.1

Model type
Protein coding
Short Description
CP12 domain-containing protein 1
Curator Summary
CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.
Computational Description
CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR